PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP22160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 535aa    MW: 58223.7 Da    PI: 4.7479
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP22160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.93.9e-1071775352374
                           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                     e Ll+cA+ +++gd  la + L +++e as  gdp++R+a+yf+eAL++rl++            ++      ++ + +
  GSMUA_AchrUn_randomP22160_001 177 LESLLDCAR-LADGDPDLAAKSLIHVRESASVLGDPTERVAFYFAEALNRRLLG-----------DQK----DHSHPSTV 240
                                    5789****9.7899****************************************...........111....23344556 PP

                           GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeel 158
                                     +f++++P+ kf+hltaNqaI+ea+e++ r+Hi+Df+i qG+QW+aLlqaLa+Rp+g+p ++R+ g+ +p  g   + +l
  GSMUA_AchrUn_randomP22160_001 241 AVFNDACPYSKFAHLTANQAIVEATESAARIHIVDFGIIQGIQWAALLQALATRPRGKPsRVRVSGIPAPMLGaaPAASL 320
                                    78*****************************************************776669********9998999**** PP

                           GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                                     +tg+rL++fA+ l+++fef++ + + +++l+++ +r++++E+++Vn++lql++ll++s ++ +   +vL + ksl P+v
  GSMUA_AchrUn_randomP22160_001 321 TATGNRLRDFAAILDLDFEFDP-ILTPIAELTVSCFRIDSDEVVVVNFMLQLYHLLADSPESVE---RVLGIAKSLVPRV 396
                                    **********************.799******************************88888887...9************ PP

                           GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv.acegaerrerhetlekWre 317
                                    v++ e ea+ n+++F+erf  al yy+a+fdsl+  + r+s er+ +Er+llg++i  +v a  g +rrer+e +e+Wr+
  GSMUA_AchrUn_randomP22160_001 397 VTLGEYEASVNRGRFVERFKAALAYYAAVFDSLDPAIRRDSAERAQMERVLLGPRILGAVgAGDGPNRRERMEAKEEWRA 476
                                    ************************************************************4457899************* PP

                           GRAS 318 rleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                     +e++GF+pvp+s++a++qaklll +++ s  y v ++   ++ l W drpL++vS+Wr
  GSMUA_AchrUn_randomP22160_001 477 VMERCGFEPVPVSNFAVSQAKLLLWNYDySYKYAVLDSAPGFLtLAWGDRPLLTVSSWR 535
                                    ****************************8888988877655555**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.716150513IPR005202Transcription factor GRAS
PfamPF035141.4E-104177535IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MAYMCAESGN LMAIAQQVIQ QQRQQQQQLA ASANPFSTST QPWGASHHHQ QHMSEAAFVI  60
PDAEAAFLEP FTPDRAAGFE APPGGSGHLD QAPFRLCDFR SSSAAVTPEF DTEEWMESLI  120
GESPADNCDL MSDPWQAAAG ASGALFADHD HQYTAVVALN PPGLASETPN TSSPPLLESL  180
LDCARLADGD PDLAAKSLIH VRESASVLGD PTERVAFYFA EALNRRLLGD QKDHSHPSTV  240
AVFNDACPYS KFAHLTANQA IVEATESAAR IHIVDFGIIQ GIQWAALLQA LATRPRGKPS  300
RVRVSGIPAP MLGAAPAASL TATGNRLRDF AAILDLDFEF DPILTPIAEL TVSCFRIDSD  360
EVVVVNFMLQ LYHLLADSPE SVERVLGIAK SLVPRVVTLG EYEASVNRGR FVERFKAALA  420
YYAAVFDSLD PAIRRDSAER AQMERVLLGP RILGAVGAGD GPNRRERMEA KEEWRAVMER  480
CGFEPVPVSN FAVSQAKLLL WNYDYSYKYA VLDSAPGFLT LAWGDRPLLT VSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1551735351375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387926.10.0PREDICTED: scarecrow-like protein 4 isoform X2
SwissprotA0A024B7I01e-170SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLM0UBC40.0M0UBC4_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP22160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-164GRAS family protein