PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP22640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 180aa    MW: 21341.5 Da    PI: 9.5448
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP22640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.42.9e-21297179
                       trihelix  1 rWtkqevlaLiearr.................emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65
                                   +Wt++ v++Li ++                     +r +++ +kk++W+ vsk m e+g+ +sp+qC++k+++lnkryk+++
  GSMUA_AchrUn_randomP22640_001  2 KWTDEVVRLLISVVAfvgdhddgsleilngsaAARRRHGASLQKKGKWKTVSKLMLEKGCYVSPQQCEDKFNDLNKRYKRLN 83
                                   699999999999999888888888877766444444445566**************************************** PP

                       trihelix 66 egekkrtsessstc 79
                                   e+ +++ts +++++
  GSMUA_AchrUn_randomP22640_001 84 EILGRGTSCQVRQW 97
                                   ******88777777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-18294No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKWTDEVVRL LISVVAFVGD HDDGSLEILN GSAAARRRHG ASLQKKGKWK TVSKLMLEKG  60
CYVSPQQCED KFNDLNKRYK RLNEILGRGT SCQVRQWFKG RALQLEEERV EIEAEALELE  120
KRHFKWQRFR GKKDRELERL MLENERLKLE NERMALQVRQ KELELDILRS MDREQDIQGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387998.17e-61PREDICTED: uncharacterized protein LOC103974835
RefseqXP_018677481.17e-61PREDICTED: uncharacterized protein LOC103974835
RefseqXP_018677482.17e-61PREDICTED: uncharacterized protein LOC103974835
TrEMBLM0UBH21e-126M0UBH2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP22640_0011e-127(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.12e-30