PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP23040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 469aa    MW: 51640.2 Da    PI: 6.9834
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP23040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.6e-15126185155
                            AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                    s y+GV++++++gr++A+++d  +  +g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GSMUA_AchrUn_randomP23040_001 126 SIYRGVTRHRWTGRYEAHLWDnSCRrQGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 185
                                    57*******************666665587446*************************98 PP
2AP247.16e-15228279155
                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSMUA_AchrUn_randomP23040_001 228 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 279
                                    57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.51E-21126195No hitNo description
PfamPF008472.3E-12126185IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17126195IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-16127194IPR001471AP2/ERF domain
SMARTSM003803.8E-30127199IPR001471AP2/ERF domain
PROSITE profilePS5103219.23127193IPR001471AP2/ERF domain
PRINTSPR003671.8E-6128139IPR001471AP2/ERF domain
CDDcd000186.96E-24228289No hitNo description
SuperFamilySSF541717.85E-18228289IPR016177DNA-binding domain
PfamPF008479.1E-10228279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18229288IPR001471AP2/ERF domain
PROSITE profilePS5103219.019229287IPR001471AP2/ERF domain
SMARTSM003803.1E-34229293IPR001471AP2/ERF domain
PRINTSPR003671.8E-6269289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MNMNASDNWL DFSLSQQRCL LEAFSDAPHH HGLSLSLSLS TNAATELVAL AGMGPKLEDF  60
LGGPPGRYSG GDVDTGPKGV CDSDLKTIAA GFQRGIPAEQ EKPKAAQKAP LEESRMAADS  120
FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR RQGQSRKGRQ VYLGGYDKEE KAARAYDLAA  180
LKYWGPTTTT NFPVSNYEKE LEEMKNMTRQ EFVASLRRKS SGFSRGASIY RGVTRHHQHG  240
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGV NAVTNFDMSR YDVERIVSSN  300
LPVGGITGKS SASTSSDTMS VDVRHQIEHH DPWATLGLIA NIPMKQDHDF CSLLTLHQHH  360
HHHQQHGQAL DFGLFSSSGV AMDLAAAYSN NDMSQESGSE LPERQQEQSQ SSSQCYSIPP  420
CVTTVGSFGG NGYGGYNYVG DWVAPPPSYY HQTSKPDVAA CHTAIFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388056.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-137AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLM0UBL20.0M0UBL2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP23040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-125AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]