PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP23560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 242aa    MW: 27390.1 Da    PI: 10.3144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP23560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-10100147455
                                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    +h+ +Er RR+ri+++++ Lr l+P +    +k   Ka +L + ++Y++ Lq
  GSMUA_AchrUn_randomP23560_001 100 SHSRAERVRRERIRERMDLLRGLVPGC----DKNTGKAVMLDEIINYVQFLQ 147
                                    89************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-1894162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.46696146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-1697161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7100147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-11102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNSSSVMVDP RGGRGVAPTP RSSMEKKRKK RDLTTALRTS TVLDCSSNVS CHQGAERNVR  60
KRNKHAEEKK KKKKKDDEAD NGEGRGYIHV RARRGEATDS HSRAERVRRE RIRERMDLLR  120
GLVPGCDKNT GKAVMLDEII NYVQFLQNQV EFLSMKLASM NPIFYDLERF ESSALQTSPF  180
HQAAPEGASR SYTMKEASTP LLLHDQGPIS LPQEHGSVVV KVADRRQELL HQVVFNNVCS  240
FQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11928PRSSMEKKRK
22529KKRKK
35974RKRNKHAEEKKKKKKK
46874KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018677521.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLM0UBR41e-180M0UBR4_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP23560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-31bHLH family protein