PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP24010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 185aa    MW: 20466.9 Da    PI: 6.9506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP24010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-183378150
                            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50
                                   +gy+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+
  GSMUA_AchrUn_randomP24010_001 33 PGYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAA 78
                                   79*****998.**********843...6*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-123378IPR001471AP2/ERF domain
CDDcd000185.58E-293396No hitNo description
SuperFamilySSF541712.75E-193494IPR016177DNA-binding domain
SMARTSM003803.5E-3334100IPR001471AP2/ERF domain
PROSITE profilePS5103221.3643494IPR001471AP2/ERF domain
PRINTSPR003671.7E-103546IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-303595IPR001471AP2/ERF domain
PRINTSPR003671.7E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEEGNTRTSG SKRGGDRGGG EKANKRSKEG KHPGYRGVRM RSWGKWVSEI REPRKKSRIW  60
LGTFPTPEMA ARAHDVAAIV TMTIKGQSAC LNFPELADEL PRPASAAPEH IQAAAALAAA  120
TTFGGRRETT RASEDDGDDK LFDLPDLPLD VSEGFRLHPS WAPSTVEDCI QFRVEEPLVW  180
EYYVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1631941172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387933.11e-106PREDICTED: ethylene-responsive transcription factor ERF039-like isoform X1
SwissprotQ9LYD38e-44DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLM0UBV91e-134M0UBV9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP24010_0011e-135(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]