PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP25630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 382aa    MW: 42750.9 Da    PI: 6.7007
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP25630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS64.32.4e-20381322105
                           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                    ++lL++cAe v+ gdl +a+++ + l  +asp+gd++ Rl++ f++AL+ r+      l+   p+ ++++   +   +++
  GSMUA_AchrUn_randomP25630_001  38 RQLLVSCAELVHRGDLPAARHTGSLLLATASPYGDSTDRLVHQFARALSLRVDP----LF---PSVDAAS--PEALQSSY 108
                                    79***************************************************9....33...3333331..22333466 PP

                           GRAS  82 klfsevsPilkfshltaNqaIlea 105
                                      f++++P+l+f+hltaNqaIlea
  GSMUA_AchrUn_randomP25630_001 109 LSFNQITPFLRFAHLTANQAILEA 132
                                    67*********************9 PP
2GRAS261.33.3e-80136381136373
                           GRAS 136 pegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.........vakrledleleeLrvkpgEalaVnl 206
                                    p++pps+RiTg g+    + + l++tg+rL+ fA++lg+ fef++l          +++++d++ ++Lr++pgE l Vn+
  GSMUA_AchrUn_randomP25630_001 136 PNNPPSIRITGTGR----NLDVLRRTGDRLQTFADSLGLGFEFHALlfpsttsdpSSSTTTDFTSSSLRLHPGEILTVNC 211
                                    589***********....99**************************9**9999888889999****************** PP

                           GRAS 207 vlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                                    vl lh+ll++   +++    +++L++v+ ++P vv+v+e+ea+hn++ F++rf+eal+yy+a+f+slea+lp++s+er+ 
  GSMUA_AchrUn_randomP25630_001 212 VLFLHNLLQDGSGSDDsrDLRAFLQAVRAMNPAVVTVAEREANHNAPIFFQRFMEALDYYTAVFESLEATLPPTSRERAA 291
                                    ********88766666355679********************************************************** PP

                           GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                                    vE+++lgrei++vva eg++rrerhe++ +W+  ++ aGF+++pls +a +qa+lllr ++ s+gy+++  ++s++lgW+
  GSMUA_AchrUn_randomP25630_001 292 VEQVWLGREIEDVVAREGERRRERHERFDRWETLMRGAGFTNLPLSPFALSQARLLLRLHYpSEGYQLHTVRDSFFLGWQ 371
                                    ******************************************************************************** PP

                           GRAS 364 drpLvsvSaW 373
                                    ++pL+svS+W
  GSMUA_AchrUn_randomP25630_001 372 NKPLFSVSSW 381
                                    ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.0311361IPR005202Transcription factor GRAS
PfamPF035148.5E-1838132IPR005202Transcription factor GRAS
PfamPF035141.2E-77136381IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MLSSLKSHEE GDQEHHRHSN PVHPNSQHGL ISPSAPVRQL LVSCAELVHR GDLPAARHTG  60
SLLLATASPY GDSTDRLVHQ FARALSLRVD PLFPSVDAAS PEALQSSYLS FNQITPFLRF  120
AHLTANQAIL EARSDPNNPP SIRITGTGRN LDVLRRTGDR LQTFADSLGL GFEFHALLFP  180
STTSDPSSST TTDFTSSSLR LHPGEILTVN CVLFLHNLLQ DGSGSDDSRD LRAFLQAVRA  240
MNPAVVTVAE REANHNAPIF FQRFMEALDY YTAVFESLEA TLPPTSRERA AVEQVWLGRE  300
IEDVVAREGE RRRERHERFD RWETLMRGAG FTNLPLSPFA LSQARLLLRL HYPSEGYQLH  360
TVRDSFFLGW QNKPLFSVSS WH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-484438126378Protein SCARECROW
5b3h_A8e-484438125377Protein SCARECROW
5b3h_D8e-484438125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388384.20.0PREDICTED: protein MONOCULM 1
SwissprotQ9ZWC52e-99SCL18_ARATH; Scarecrow-like protein 18
TrEMBLM0UCC10.0M0UCC1_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP25630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.18e-89GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]