PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP26940_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 185aa    MW: 20333.5 Da    PI: 9.9994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP26940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-173887255
                            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                    y+GVr +k +grWvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  GSMUA_AchrUn_randomP26940_001 38 PYRGVRMRK-WGRWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVYYLRG 87
                                   59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.8E-3538101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-303896IPR001471AP2/ERF domain
PROSITE profilePS5103222.7743895IPR001471AP2/ERF domain
CDDcd000183.52E-263996No hitNo description
SuperFamilySSF541711.7E-213997IPR016177DNA-binding domain
PfamPF008479.8E-113987IPR001471AP2/ERF domain
PRINTSPR003671.1E-113950IPR001471AP2/ERF domain
PRINTSPR003671.1E-117797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEGQCCSTST SEDTRKSPPP AVGQRAAASG GGGSRERPYR GVRMRKWGRW VAEIREPNKR  60
SRIWLGSYST AVAAARAYDT AVYYLRGRSA RLNFPDEILA EDVDGEGFGV SGVASMSAAS  120
IRKKATEVGA RVDALQTGLT SRPSPHLRQQ RGHHQHQLEQ QQLPSRRAMN PDLNQEPSPE  180
DSDKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-163197774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387797.11e-134PREDICTED: ethylene-responsive transcription factor RAP2-9-like
SwissprotO221742e-44ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLM0UCQ21e-133M0UCQ2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP26940_0011e-134(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-27DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]