PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP27090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 141aa    MW: 15651.7 Da    PI: 4.6548
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP27090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.9e-152441055
                            AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                   +++g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+  ++g
  GSMUA_AchrUn_randomP27090_001  2 RSWGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAAMTIKG 44
                                   57**********843...6**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-28158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-28153IPR001471AP2/ERF domain
PROSITE profilePS5103219.915152IPR001471AP2/ERF domain
CDDcd000188.77E-27154No hitNo description
SuperFamilySSF541716.54E-18253IPR016177DNA-binding domain
PfamPF008471.6E-9244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MRSWGKWVSE IREPRKKSRI WLGTFPTAEM AARAHDVAAM TIKGQSACLN FPELADELPR  60
PASAAPEHIQ AAAAQAEMPM SRSPAPAALS SDGDDKLFDL PDLPLDVSEG FRSHPSWAPS  120
TVEDCIQFRV EEPLVWEYYV N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-152522172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387933.13e-93PREDICTED: ethylene-responsive transcription factor ERF039-like isoform X1
SwissprotQ9M0803e-37ERF43_ARATH; Ethylene-responsive transcription factor ERF043
SwissprotQ9SUK81e-37ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLM0UCR71e-98M0UCR7_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP27090_0012e-99(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.13e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]