PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP27100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 216aa    MW: 24112 Da    PI: 5.1688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP27100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-1964112355
                            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+G+r+++ +g+W+AeIrdp+    +  r++lg+f taeeAa+a+++ +++++g
  GSMUA_AchrUn_randomP27100_001  64 YRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTFATAEEAARAYDREARRIRG 112
                                    9*******.**********75....44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.6E-3263121IPR001471AP2/ERF domain
SMARTSM003804.6E-3863126IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2263121IPR016177DNA-binding domain
PROSITE profilePS5103223.40663120IPR001471AP2/ERF domain
PRINTSPR003677.8E-126475IPR001471AP2/ERF domain
CDDcd000185.97E-3264121No hitNo description
PfamPF008471.9E-1164112IPR001471AP2/ERF domain
PRINTSPR003677.8E-1286102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MCGGAIISDF IPPCSQHRRS RPNPSSDSDN LLSATDLWPG SFDDPQHVPT QDKAPRKRER  60
KNLYRGIRQR PWGKWAAEIR DPVKGVRVWL GTFATAEEAA RAYDREARRI RGKKAKVNFP  120
NELQPGEVDQ HAPFQHVPAI VEPKLEEAPA NGDAEVRRLS EELMAYESYM NFFGIPYMEG  180
GGEAAVDGMG ACNPPTSADM EMLWSFDDIL PTSGDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2364127670ATERF1
3gcc_A3e-2364127670ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126116e-56CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387936.11e-161PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLM0UCR81e-159M0UCR8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP27100_0011e-160(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.18e-38ERF family protein