PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP27230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 280aa    MW: 32028.9 Da    PI: 7.7465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP27230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-183888155
                            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                   ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  GSMUA_AchrUn_randomP27230_001 38 TRYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEQAACAYDIAARAMRG 88
                                   68********.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-293895No hitNo description
PfamPF008476.7E-113888IPR001471AP2/ERF domain
PROSITE profilePS5103222.4973996IPR001471AP2/ERF domain
SMARTSM003802.8E-3239102IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-213997IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-293996IPR001471AP2/ERF domain
PRINTSPR003672.3E-94051IPR001471AP2/ERF domain
PRINTSPR003672.3E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEEDSNSSHQ YIRKCSTISG SSNNNNRNKR ATASKDGTRY RGVRRRPWGR YAAEIRDPQS  60
KERRWLGTFD TAEQAACAYD IAARAMRGLK ARTNFHYPLT AAVQPPAAPV ATVDHFLLHP  120
SEWTWNNVPH MHISPPVSHH RHFSLDPLLL RNLINHSSSL HHHPPNTSAS SVTEVPTRFA  180
EHCDFFRTEP PESGLLQEIV NGFYRRRSID TDYTLKDSRS QCDTKDAVDL LNYHIQMPLK  240
QEEKMFDSAD DLPMITQGLL EDIVHCPDFF DMLSAKLHKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1926103281Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548774e-36EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388064.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLM0UCT10.0M0UCT1_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP27230_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-24DORNROSCHEN-like