PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01000089001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB_related

Protein Properties

Length: 1152aa MW: 129501 Da PI: 8.7979

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01000089001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.4	1.9e-09	46	82	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e +++a +++G++ Wk++a + +R+l+++ GSVIVT01000089001 46 QWSKEELEHFYEAYRKYGKD-WKKVAGVVR-NRSLEMVE 82 6***************99.*****.*99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-11	39	90	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.038	42	95	IPR017884	SANT domain
SMART	SM00717	7.0E-4	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-4	46	81	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-7	46	86	IPR001005	SANT/Myb domain
CDD	cd00167	3.11E-5	47	81	No hit	No description
SMART	SM01135	3.5E-53	619	720	IPR033471	DIRP domain
Pfam	PF06584	1.2E-32	619	719	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1152 aa Download sequence Send to blast
MAPTKKYRGV NKRFLNSHEV SLDRDIENST KSRQRKRKLS DMLGSQWSKE ELEHFYEAYR 60 KYGKDWKKVA GVVRNRSLEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLGGGDN 120 ESNDVSGTPR KTQKPVRGKV HLSISKEELL QPPSVANDGC LSLLKRSLSD GIRPHAVRKR 180 TPRFPVSCSY KKGNEESYFS LNKVSLRSDM DTTDDEVAHV AALTLTEASL REGSHASQAP 240 FRRTEHMKAS PVQSRERMPL QMVQTKIHGI VTDEDYFEGN LESRGAENGD YAGDTCSLMD 300 SECVGTVVLQ EGKKFCDNEK VEEIGNNQFD DCREACSDTE GHNMNPVKRK IDTEVTNAKI 360 EPSSPCGQRK RSKKLFFGDE SSALDALQTL ADLSLMMPDS AVESESSIQL KEEKITLDNV 420 HEAMFASHQR DKNKLMVAKE RVVKAIPGVE VTASIKYEHG RDSAIDVNAL SEAQQRPESN 480 NKQLKRKDKS LASKALAEEE NKSMVKGRHA GQIAALSKQW KSVRPLEHSL NSDQKEARND 540 LAGSTASHVN LPTKQRSRRK MHLKKTLIQK EMKSPENSFS KQSSKYSTSL QYSTDYLKKK 600 ISCSLSSYMA RRWCTFEWFY SAIDYPWFVK KEFVEYLDHV GLGHIQRLSR VEWDVIRSSL 660 GKPRRFSERF LHEEKEKLKQ YRKSVRTHYT ELRTGAREGL PRDLARPLSV GQRVIALHPK 720 TREVHNGSVL TVDHDKCMVQ FDRAEIGVEF VMDIDCMPSD PLDNMPEALR RQNSTVGQFL 780 VNSKEQKVRH LVNAHTPMNS LIKQAKHNRF RLTIDRISQE KYLLSEIDRS SLYQIFKSKH 840 LGNNATYGQP YMVAVQARED DIQALSELNC AFDKKCPFST EALLMELRHA NNDVLGNEDG 900 FLKDSESLKK HCAMVLVHLK EVLWQVSSAL LYLRQCEAYP GKTLPPWLTT STISSGPLMP 960 PSSLDNPSST SLEPGFNVGE IVLGSRSKAH KMVHAAMKAI ASMKQGEEAF TRIGDALDSM 1020 HKQQLRSDSG VSVLRVLDPV NGSFAHPNQL TSFTSEPLLT SHASGPKLPN DSGKIEAPIA 1080 SELITSCVAA LLMIQTCTER QYPPSDVAQI LDSAIISLHP GCPQNLPIYR EIEMCMGRIK 1140 TQILALVPTL H*

Sequence ? help Back to Top

Protein Sequence Length: 1152 aa Download sequence Send to blast

MAPTKKYRGV NKRFLNSHEV SLDRDIENST KSRQRKRKLS DMLGSQWSKE ELEHFYEAYR  60
KYGKDWKKVA GVVRNRSLEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLGGGDN  120
ESNDVSGTPR KTQKPVRGKV HLSISKEELL QPPSVANDGC LSLLKRSLSD GIRPHAVRKR  180
TPRFPVSCSY KKGNEESYFS LNKVSLRSDM DTTDDEVAHV AALTLTEASL REGSHASQAP  240
FRRTEHMKAS PVQSRERMPL QMVQTKIHGI VTDEDYFEGN LESRGAENGD YAGDTCSLMD  300
SECVGTVVLQ EGKKFCDNEK VEEIGNNQFD DCREACSDTE GHNMNPVKRK IDTEVTNAKI  360
EPSSPCGQRK RSKKLFFGDE SSALDALQTL ADLSLMMPDS AVESESSIQL KEEKITLDNV  420
HEAMFASHQR DKNKLMVAKE RVVKAIPGVE VTASIKYEHG RDSAIDVNAL SEAQQRPESN  480
NKQLKRKDKS LASKALAEEE NKSMVKGRHA GQIAALSKQW KSVRPLEHSL NSDQKEARND  540
LAGSTASHVN LPTKQRSRRK MHLKKTLIQK EMKSPENSFS KQSSKYSTSL QYSTDYLKKK  600
ISCSLSSYMA RRWCTFEWFY SAIDYPWFVK KEFVEYLDHV GLGHIQRLSR VEWDVIRSSL  660
GKPRRFSERF LHEEKEKLKQ YRKSVRTHYT ELRTGAREGL PRDLARPLSV GQRVIALHPK  720
TREVHNGSVL TVDHDKCMVQ FDRAEIGVEF VMDIDCMPSD PLDNMPEALR RQNSTVGQFL  780
VNSKEQKVRH LVNAHTPMNS LIKQAKHNRF RLTIDRISQE KYLLSEIDRS SLYQIFKSKH  840
LGNNATYGQP YMVAVQARED DIQALSELNC AFDKKCPFST EALLMELRHA NNDVLGNEDG  900
FLKDSESLKK HCAMVLVHLK EVLWQVSSAL LYLRQCEAYP GKTLPPWLTT STISSGPLMP  960
PSSLDNPSST SLEPGFNVGE IVLGSRSKAH KMVHAAMKAI ASMKQGEEAF TRIGDALDSM  1020
HKQQLRSDSG VSVLRVLDPV NGSFAHPNQL TSFTSEPLLT SHASGPKLPN DSGKIEAPIA  1080
SELITSCVAA LLMIQTCTER QYPPSDVAQI LDSAIISLHP GCPQNLPIYR EIEMCMGRIK  1140
TQILALVPTL H*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM434219	1e-170	AM434219.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X191377.6, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019080574.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X1
Refseq	XP_019080575.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X1
Refseq	XP_019080577.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X3
TrEMBL	A0A251P294	0.0	A0A251P294_PRUPE; Uncharacterized protein
STRING	XP_008246389.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2479	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	GSVIVT01000089001