PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000318001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 111aa    MW: 11524.2 Da    PI: 11.0948
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000318001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0585107223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C+k+F++   L++H +t H
  GSVIVT01000318001  85 SCKSCSKTFNSENALQSHSKTkH 107
                        6******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.96E-678106No hitNo description
PROSITE profilePS501579.99384110IPR007087Zinc finger, C2H2
PfamPF121716.3E-585106IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028086107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MKDQRVKKVP ASLLLIQPGK KRPTESATKT PVPAKKAKLV SPQNTDGKKG GAHTATPHPN  60
KKAGKTPATG DKGKEQSPKS GGQVSCKSCS KTFNSENALQ SHSKTKHGVS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.285801e-117cell culture
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3784081e-146FQ378408.1 Vitis vinifera clone SS0AEB13YK11.
GenBankFQ3863131e-146FQ386313.1 Vitis vinifera clone SS0AEB2YG11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270966.23e-54PREDICTED: histone deacetylase HDT1
SwissprotQ9M4U53e-29HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLF6HJF01e-59F6HJF0_VITVI; Uncharacterized protein
STRINGVIT_03s0132g00020.t012e-60(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-19histone deacetylase 2C