PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01000386001

Common Name

LOC100243782, VIT_17s0000g00810, VITISV_000774

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

ZF-HD

Protein Properties

Length: 119aa MW: 13305 Da PI: 8.3878

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01000386001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	91.2	9.4e-29	4	56	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 Y+eCl+NhAaslG++a+DGCgEf+ + +++ +l CaACgCHRnFHR+ ++ GSVIVT01000386001 4 ELYRECLRNHAASLGSYATDGCGEFTLD---ATSPGGLLCAACGCHRNFHRKLISN 56 68**********************98...5689***************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	8.6E-24	5	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-17	6	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.095	6	53	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.0E-24	6	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.85E-9	42	104	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-21	45	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	9.0E-23	47	104	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MEGELYRECL RNHAASLGSY ATDGCGEFTL DATSPGGLLC AACGCHRNFH RKLISNQKEK 60 MLAFAEKIRW KMQRKEEEDE IERFCRGVGV SRQVFKVWMH NHKNSSSSSS SASTTLTQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-16	47	109	18	79	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM479560	1e-102	AM479560.2 Vitis vinifera contig VV78X074758.3, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002263466.1	8e-71	PREDICTED: zinc-finger homeodomain protein 1
Swissprot	A2XLF4	3e-21	ZHD11_ORYSI; Zinc-finger homeodomain protein 11
Swissprot	Q10DV5	3e-21	ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBL	A5C2A7	2e-69	A5C2A7_VITVI; Uncharacterized protein
STRING	VIT_17s0000g00810.t01	3e-70	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	9e-20	homeobox protein 34

Link Out ? help Back to Top
Phytozome	GSVIVT01000386001
Entrez Gene	100243782

Publications ? help Back to Top
Velasco R, et al. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE, 2007. 2(12): p. e1326 [PMID:18094749]