PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000449001
Common NameLOC100256383, VIT_12s0134g00480
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 258aa    MW: 29129.6 Da    PI: 8.2648
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000449001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g WT+eEd +lv +++++G  +W++ +++ g+ R++k+c++rw +yl
  GSVIVT01000449001 14 KGTWTPEEDHKLVAYITRYGCWNWRRLPKYAGLMRCGKSCRLRWMNYL 61
                       799*****************99************************97 PP
2Myb_DNA-binding51.52.3e-1667111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+ ++eE++ ++++++ lG++ W++Ia+ ++ gRt++++k++w++ 
  GSVIVT01000449001  67 RGNYSKEEEDTIIKLHASLGNR-WSAIAAQLP-GRTDNEIKNYWHTN 111
                        899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.019961IPR017930Myb domain
SuperFamilySSF466892.19E-2811108IPR009057Homeodomain-like
SMARTSM007172.2E-81363IPR001005SANT/Myb domain
PfamPF002494.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-221568IPR009057Homeodomain-like
CDDcd001672.23E-81661No hitNo description
PROSITE profilePS5129424.52662116IPR017930Myb domain
SMARTSM007173.1E-1666114IPR001005SANT/Myb domain
PfamPF002492.4E-1567111IPR001005SANT/Myb domain
CDDcd001671.88E-1169112No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2669117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVRTPCCDKS GLKKGTWTPE EDHKLVAYIT RYGCWNWRRL PKYAGLMRCG KSCRLRWMNY  60
LRPNIKRGNY SKEEEDTIIK LHASLGNRWS AIAAQLPGRT DNEIKNYWHT NLKKRLIKQK  120
TASHEANFIS NGLSQRETSQ NRSVVHPIAS QILESYPFSP QPSSSTETSS STTDSSAAGG  180
NSSNCASYDC SSLASMETVA ELSGNFWTEP FFADNYYIPN DSMAPMVDPE ILFHPPLSGE  240
LLYSDGFYNG HEGLRYW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.287860.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4643580.0AM464358.2 Vitis vinifera contig VV78X073501.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272704.10.0PREDICTED: myb-related protein Myb4
TrEMBLA0A438GF700.0A0A438GF70_VITVI; Transcription factor MYB15
TrEMBLD7SQS00.0D7SQS0_VITVI; Uncharacterized protein
STRINGVIT_12s0134g00480.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-63myb domain protein 15