PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000714001
Common NameLOC100261345, VIT_07s0141g00170
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 421aa    MW: 44806.9 Da    PI: 6.1868
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000714001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.11.5e-16211266459
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                         kr+rr+ +NRe+ArrsR+RK++ + eLe+ v +L  eN++L k+l  +++++ + 
  GSVIVT01000714001 211 EKRARRMLSNRESARRSRRRKQEHLSELETQVSQLGVENSSLLKRLTDINQKYNEA 266
                        69********************************************9999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575120No hitNo description
SMARTSM003381.6E-20208272IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.932210265IPR004827Basic-leucine zipper domain
PfamPF001705.0E-14212264IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.42E-12212263No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-13212264No hitNo description
PROSITE patternPS000360215230IPR004827Basic-leucine zipper domain
PfamPF124986.4E-27279390IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MLEKFLLEAS SSSPASSTSC PVSAVSQCPA PYADVTAPYA AAAAAAQSSS SKSRPRGEDD  60
EVVEIKVRSP PSDQPPENPV DHQAFLRKRL DLACAAVALS RESGVKPQES AVKPQESAVK  120
PQESALSMQT QSKPSQLGSQ AVATVDPGHV FPITQDKVEG GSLGIPASAT SQNKSGAQVI  180
TTTSGSSREL SDDDELEGET DTTGNMDPAD EKRARRMLSN RESARRSRRR KQEHLSELET  240
QVSQLGVENS SLLKRLTDIN QKYNEAAVDN RVLKADVETL RTKVRMAEDA VKRVTGLTSL  300
LPAIPDIPSM GMPFVNNTSS NTSADAAVPV QRDSNHFIHP PVPNNLIAPP HDQRLNNGFP  360
TNCPPLPTES LLNGAGPKNM PQTSPMQNVS RVCVGANPCG VMPGWDSVPS HVTTNIKNQN  420
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224231RRSRRRKQ
2226231SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.13750.0bud| fruit| inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4273510.0AM427351.2 Vitis vinifera contig VV78X052418.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281328.10.0PREDICTED: light-inducible protein CPRF2 isoform X2
SwissprotQ990909e-66CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLF6GXL20.0F6GXL2_VITVI; Uncharacterized protein
STRINGVIT_07s0141g00170.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.26e-39bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]