PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01001286001
Common NameVIT_02s0154g00210
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 106aa    MW: 12209.5 Da    PI: 10.0561
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01001286001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.93.1e-112646323
                       -SS-EEEEEEE--TT-SS-EE CS
               WRKY  3 DgynWrKYGqKevkgsefprs 23
                       D ++WrKYGqK++kgs++pr 
  GSVIVT01001286001 26 DDFSWRKYGQKPIKGSPHPRY 46
                       99*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.2E-7322IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-101247IPR003657WRKY domain
PROSITE profilePS5081112.7021956IPR003657WRKY domain
SuperFamilySSF1182904.18E-92247IPR003657WRKY domain
SMARTSM007744.6E-52476IPR003657WRKY domain
PfamPF031063.5E-72646IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MCRKLRIKRS FKVPAISNKL ADIPPDDFSW RKYGQKPIKG SPHPRYFDVL PTFSSCYQDP  60
FRLAIHYFMV VSFHSPISKF IICGTLFCLL HLGSSIHIFL FLDLT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.19811e-174bud| fruit| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4257991e-171AM425799.2 Vitis vinifera contig VV78X253364.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268403.31e-24PREDICTED: probable WRKY transcription factor 21
SwissprotQ9SR071e-21WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLD7TN243e-70D7TN24_VITVI; Uncharacterized protein
STRINGVIT_02s0154g00210.t014e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.21e-24WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]