PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01001940001
Common NameLOC100266389, VIT_13s0175g00120
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 223aa    MW: 25063.6 Da    PI: 9.9308
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01001940001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.93.4e-16152202556
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                        +r++r++kNRe+A rsR+RK+a++ eLe+kv  Le+eN++L+k  +el+k+ 
  GSVIVT01001940001 152 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRK-RKELEKML 202
                        79****************************************5.57888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-14143200No hitNo description
PRINTSPR000418.6E-5147163IPR001630cAMP response element binding (CREB) protein
SMARTSM003381.6E-12148216IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.691150195IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.81E-11152197No hitNo description
CDDcd147071.50E-22152206No hitNo description
PfamPF001701.3E-13152200IPR004827Basic-leucine zipper domain
PROSITE patternPS000360155170IPR004827Basic-leucine zipper domain
PRINTSPR000418.6E-5165185IPR001630cAMP response element binding (CREB) protein
PRINTSPR000418.6E-5185202IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MYSLTLDEVQ NQLGDLGKPL TSMNLDELLK NVWTPSLSLT GALSKKTVDE VWRDIQGHGK  60
NSEEKKSRER QPTLGEMTLE DFLVKAGVVA EPSDKKIAGT PLPMGPSSVM DVTYPDNQVA  120
LSSPLMGALS DTQAPGRKRV SQEDMIEKTV ERRQKRMIKN RESAARSRAR KQAYTNELEN  180
KVSRLEEENE RLRKRKELEK MLPSAPPPEP KYQLRRTSSA PF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.246900.0cell culture| flower| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00409DAPTransfer from AT3G56850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4697081e-114AM469708.2 Vitis vinifera contig VV78X277820.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265747.11e-145PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
SwissprotQ9LES39e-84AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLF6I7581e-144F6I758_VITVI; Uncharacterized protein
STRINGVIT_13s0175g00120.t011e-144(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5401580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.12e-72ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]