PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01002384001

Common Name

VIT_07s0151g00480

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB_related

Protein Properties

Length: 123aa MW: 13599.8 Da PI: 10.8444

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01002384001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.1	1.5e-11	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +v ++G g W+tI R+ ++k++w++ GSVIVT01002384001 5 KQKWTSEEEAALKAGVIKHGAGKWRTILMDPEfstilHLRSNVDLKDKWRNM 56 79*********************************88*********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.629	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.66E-15	2	59	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-6	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-13	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-7	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	6.84E-19	6	57	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031627	Biological Process	telomeric loop formation
GO:0000784	Cellular Component	nuclear chromosome, telomeric region
GO:0003691	Molecular Function	double-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MGAPKQKWTS EEEAALKAGV IKHGAGKWRT ILMDPEFSTI LHLRSNVDLK DKWRNMNVMA 60 SGLGSRHRAK LALKNQTTPK HHEEAMALST VVQSGEEILD AKPLAISRGP LRIDGPKKGI 120 TRL

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ381824	0.0	FQ381824.1 Vitis vinifera clone SS0ABG82YJ21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010645306.1	6e-86	PREDICTED: telomere repeat-binding factor 1 isoform X2
Refseq	XP_019073112.1	6e-86	PREDICTED: telomere repeat-binding factor 1 isoform X2
Refseq	XP_019073113.1	6e-86	PREDICTED: telomere repeat-binding factor 1 isoform X2
Swissprot	Q8VWK4	2e-43	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	D7U6U9	3e-84	D7U6U9_VITVI; Uncharacterized protein
STRING	VIT_07s0151g00480.t01	6e-85	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP855	16	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	8e-46	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	GSVIVT01002384001

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]