PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01002668001
Common NameVIT_00s0824g00020
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 178aa    MW: 20204.4 Da    PI: 9.9536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01002668001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.5e-13753455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        h ++Er+RR+++ ++f  L  ++P +     kK +Ka++L  A++Y+k+Lq
  GSVIVT01002668001  7 DHVIAERKRREKLTQRFIALSAIVPGL-----KKTDKASVLGDAIKYLKQLQ 53
                       699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.913352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10753IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-17765IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16865IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.29E-11857No hitNo description
SMARTSM003531.8E-14958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
NPLNNQDHVI AERKRREKLT QRFIALSAIV PGLKKTDKAS VLGDAIKYLK QLQERVKTLE  60
EQTTKKTVES VVSVKKSKLS DNDQNPDSFS DQPLPEIEAR VSNKDVLIRI HCVKQKGFAV  120
RILGEIEKLR LRVVNSSVLP FGDYIMDITV VAQMEDEFCT TAKDLVRNLR LAFQHFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-15256657Transcription factor MYC2
5gnj_B5e-15256657Transcription factor MYC2
5gnj_E5e-15256657Transcription factor MYC2
5gnj_F5e-15256657Transcription factor MYC2
5gnj_G5e-15256657Transcription factor MYC2
5gnj_I5e-15256657Transcription factor MYC2
5gnj_M5e-15256657Transcription factor MYC2
5gnj_N5e-15256657Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11116ERKRRE
21217RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.302320.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4646730.0AM464673.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X054508.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263046.41e-127PREDICTED: transcription factor bHLH25, partial
SwissprotQ9T0722e-62BH025_ARATH; Transcription factor bHLH25
TrEMBLF6H8A51e-121F6H8A5_VITVI; Uncharacterized protein (Fragment)
STRINGVIT_00s0824g00020.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-55bHLH family protein