PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01002833001
Common NameVIT_00s0927g00010
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 236aa    MW: 26371.2 Da    PI: 9.7736
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01002833001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12173218555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR+++ ++f  L  ++P +     kK +Ka++L  A++Y+k+Lq
  GSVIVT01002833001 173 HVIAERKRREKLTQRFIALSAIVPGL-----KKTDKASVLGDAIKYLKQLQ 218
                        889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.773168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16172229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10173218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.07E-13173222No hitNo description
SuperFamilySSF474594.06E-16173229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-14174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNSHRRFGIE DPTFIHQYQM QSFGNPVDHG FNFQSFSSDS YSSYLSFSPK TTPNFCSSAV  60
ENFQTDIERT AKQLKTNSWE SSTSNHITPK ASSSSSSQLL SFGNSNSPLP TDVQNFHENL  120
DCTVKPKDEA ASHGNMNFAS VISKSSYGNQ NHGHGTKRVG TPITRNPLNN HDHVIAERKR  180
REKLTQRFIA LSAIVPGLKK TDKASVLGDA IKYLKQLQER VKTLEEQTTK KTVESV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14167221657Transcription factor MYC2
5gnj_B3e-14167221657Transcription factor MYC2
5gnj_E3e-14167221657Transcription factor MYC2
5gnj_F3e-14167221657Transcription factor MYC2
5gnj_G3e-14167221657Transcription factor MYC2
5gnj_I3e-14167221657Transcription factor MYC2
5gnj_M3e-14167221657Transcription factor MYC2
5gnj_N3e-14167221657Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERKRRE
2177182RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4646730.0AM464673.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X054508.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276304.31e-170PREDICTED: transcription factor bHLH25, partial
SwissprotQ9T0722e-29BH025_ARATH; Transcription factor bHLH25
TrEMBLF6GZG71e-168F6GZG7_VITVI; Uncharacterized protein (Fragment)
STRINGVIT_00s0927g00010.t011e-169(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-31bHLH family protein