PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01003614001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

ZF-HD

Protein Properties

Length: 194aa MW: 21352.1 Da PI: 7.5997

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01003614001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.5	3.2e-33	77	133	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 k rY+eClkNhA+s+GghavDGCgEfm++ g+egt +alkCaAC+CHRnFHR+e+e e GSVIVT01003614001 77 KPRYRECLKNHAVSIGGHAVDGCGEFMAA-GAEGTLDALKCAACNCHRNFHRKEMEGE 133 679***********************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-23	60	131	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.3E-30	79	130	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.9E-30	79	130	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.243	80	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.4E-17	132	172	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.29E-8	133	172	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MNCTAVPPHR PDHSTSRQSP FYGAVKIKTM SGKLMEFEDQ EEHEEEIGLP TSYDSFGNST 60 RVKMATSGGE GSPAPRKPRY RECLKNHAVS IGGHAVDGCG EFMAAGAEGT LDALKCAACN 120 CHRNFHRKEM EGERLGWRIQ KHDEAVVQQF CSETGVKRHV LKVWMHNNKH TLGLPTRHTL 180 QDALLVPGEP SSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-17	132	171	36	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.9680	1e-166	bud\| fruit\| inflorescence\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM445786	1e-155	AM445786.1 Vitis vinifera contig VV78X220028.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003635057.1	6e-55	PREDICTED: zinc-finger homeodomain protein 2 isoform X1
Refseq	XP_019073649.1	5e-55	PREDICTED: zinc-finger homeodomain protein 1 isoform X2
Swissprot	Q9SB61	5e-29	ZHD2_ARATH; Zinc-finger homeodomain protein 2
STRING	VIT_00s0199g00250.t01	2e-54	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65410.1	2e-28	homeobox protein 25

Link Out ? help Back to Top
Phytozome	GSVIVT01003614001

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]