PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003675001
Common NameLOC100266336, VIT_00s0203g00170
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 269aa    MW: 30171.7 Da    PI: 5.4869
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003675001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-141562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd++l+ ++k++G  +W+  ++  g+ R++k+c++rw +yl
  GSVIVT01003675001 15 KGSWSPEEDQKLKAYIKRYGIWNWTEMPKAAGLSRSGKSCRLRWVNYL 62
                       799*****************99************************97 PP
2Myb_DNA-binding51.13.1e-1668111146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++ eE++ +++ +k+lG++ W++Ia++++ gRt++++k++w++
  GSVIVT01003675001  68 RGSFSCEEEKTILEMHKKLGNR-WSAIAERLP-GRTDNEIKNYWHT 111
                        899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.6051062IPR017930Myb domain
SuperFamilySSF466891.42E-2913109IPR009057Homeodomain-like
SMARTSM007178.5E-131464IPR001005SANT/Myb domain
PfamPF002495.1E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-221669IPR009057Homeodomain-like
CDDcd001671.61E-91762No hitNo description
PROSITE profilePS5129423.82863117IPR017930Myb domain
SMARTSM007175.9E-1567115IPR001005SANT/Myb domain
PfamPF002493.5E-1568111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2470115IPR009057Homeodomain-like
CDDcd001676.68E-1174113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVRTPYYSDV STLKKGSWSP EEDQKLKAYI KRYGIWNWTE MPKAAGLSRS GKSCRLRWVN  60
YLKPGIKRGS FSCEEEKTIL EMHKKLGNRW SAIAERLPGR TDNEIKNYWH TKLRKLKDNS  120
APRAKSQAPK TSTVEAKPIG SPKDASSLGS EHPWSSQLSI DDSSSSITSL AVGADEIQLE  180
GNSRDPMSTD STQPFAYDSS SSVTSPAVGT DKNQTMEGSA ESERTFGDFQ AFPVDDLFMP  240
GDYFWETYPD LELAFPICEE WVQEPLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28101182109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.302710.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4722360.0AM472236.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X045400.10, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019073657.10.0PREDICTED: myb-related protein Myb4 isoform X1
RefseqXP_019073658.10.0PREDICTED: myb-related protein Myb4 isoform X2
TrEMBLD7UDQ70.0D7UDQ7_VITVI; Uncharacterized protein
STRINGVIT_00s0203g00170.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.13e-49myb domain protein 74