PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003697001
Common NameVIT_07s0205g00190
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 339aa    MW: 37812.6 Da    PI: 6.8848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003697001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-13162209355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + h ++Er+RR+++N  f  L  ++P +     kK +Ka++L  Av+Y+k+Lq
  GSVIVT01003697001 162 QEHVIAERKRREKLNLQFIALSAIIPGL-----KKTDKASVLGDAVKYVKQLQ 209
                        6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.567159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16160223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16162220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10162209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.18E-12164213No hitNo description
SMARTSM003533.1E-14165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEDPTFIHQY SPMQSLGDSL DEFDFKSFSS ENFSSYPSTS PKSSNPHLFD SIIENFQTGG  60
VERPRKQLKT ASGKFCPTGS KTLEASSSSS SYLISFGNSD LNPIPDDTLI WNGKPKDRAA  120
ANGYMNLESL ISQDSYQKQD HSPTYGQGTK SLSSTRNPSQ NQEHVIAERK RREKLNLQFI  180
ALSAIIPGLK KTDKASVLGD AVKYVKQLQE RVKMLEEQTT KKMVESVVTV KKYQLSDDET  240
SLSYHDSDSS SNQPLLEIEA RVSNKDVLIR IHCQKEKGFA VKILGEVEKL HLTVINSSFT  300
AFGDYIMDIT IVAQMDNGFC TTAKDLVKNL RLAFLQFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172ERKRRE
2168173RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4327320.0AM432732.2 Vitis vinifera contig VV78X110636.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002262815.40.0PREDICTED: transcription factor NAI1
SwissprotQ9T0724e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLD7SSH40.0D7SSH4_VITVI; Uncharacterized protein
STRINGVIT_07s0205g00190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-53bHLH family protein