PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003698001
Common NameVIT_07s0205g00180
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 351aa    MW: 39695.9 Da    PI: 8.5556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003698001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10174219555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR ++ ++f  L  l+P +     +K++K+++L  A +Y+k+Lq
  GSVIVT01003698001 174 HVIAERKRRGKLTQRFIALSALVPGL-----RKMDKISVLGDAAKYLKQLQ 219
                        889**********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15173230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15174235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-8174219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-11174223No hitNo description
SMARTSM003534.8E-14175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MMFKRWMNLT TGMEDPTFIH QYHMLPFDNS FDGFNFDSFS SESNSSYPSF SPETTPNFCG  60
STFQTGVGRQ TKQFKTNSWE SCTTKPITPR APSSSTVQLI SFGNSNLPPP TDTQKFHGYP  120
DNKVKPKDED GSDRNMKFAS LISEGSYENQ NYSPKSGDRT KRVSSTCRTN NHDHVIAERK  180
RRGKLTQRFI ALSALVPGLR KMDKISVLGD AAKYLKQLQE RVQKLEEQTA TKTMESVVFV  240
KKSQLCDDEL SSSDQNSDSC SNQTLLEIEA RVSNKDVLIR IHCERQKGFT AKILDEIEKL  300
HLTVVHCSSL PFGDYIMVTT VVARMEDKFC MTVKDLVRNL RLAFSTLHVN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4327320.0AM432732.2 Vitis vinifera contig VV78X110636.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002262843.20.0PREDICTED: transcription factor bHLH18
RefseqXP_010652695.10.0PREDICTED: transcription factor bHLH18
TrEMBLD7SSH50.0D7SSH5_VITVI; Uncharacterized protein
STRINGVIT_07s0205g00180.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-56bHLH family protein