PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003701001
Common NameVITISV_026466
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 187aa    MW: 21097.4 Da    PI: 8.8674
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003701001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-131056455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  GSVIVT01003701001 10 DHIMAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYLKQLQ 56
                       699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.72655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-181069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-111056IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-181073IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-121160No hitNo description
SMARTSM003532.7E-151261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd021160.00711117174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRRTSSHAQD HIMAERKRRE KLSQRFIALS ALVPGLKKMD KASVLGDAIK YLKQLQERVK  60
SLEEQMKETT VESVVFIKKS QLSADDETSS CDENFDGCRE DAVRDIEARV SDKNVLIRIH  120
CKKQKGFVAK VLGEIEEHHL SVVNSSVLPF GKHAMDITVV AQMGDELQVT VKDLVNNLRL  180
AFLKFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-151059857Transcription factor MYC2
5gnj_B3e-151059857Transcription factor MYC2
5gnj_E3e-151059857Transcription factor MYC2
5gnj_F3e-151059857Transcription factor MYC2
5gnj_G3e-151059857Transcription factor MYC2
5gnj_I3e-151059857Transcription factor MYC2
5gnj_M3e-151059857Transcription factor MYC2
5gnj_N3e-151059857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11419ERKRRE
21520RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4349640.0AM434964.2 Vitis vinifera contig VV79X001348.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270448.21e-133PREDICTED: transcription factor bHLH18
RefseqXP_019076579.11e-133PREDICTED: transcription factor bHLH18
SwissprotQ9T0721e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A438KPR71e-131A0A438KPR7_VITVI; Transcription factor bHLH25
TrEMBLD7SSH71e-132D7SSH7_VITVI; Uncharacterized protein
STRINGVIT_07s0205g00160.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-64bHLH family protein