PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003836001
Common NameLOC100257602, VIT_04s0210g00170
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family SBP
Protein Properties Length: 208aa    MW: 24335.6 Da    PI: 6.3218
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003836001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1246.2e-3984161178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cq+++C +dl  ak+yhrrhkvCe h+ka+ v++ g+eqrfCqqCsrfhe+s+fD++krsCr+rLa+hn+rrrk+q+
  GSVIVT01003836001  84 CCQADDCGVDLRAAKRYHRRHKVCERHAKAAFVFLGGIEQRFCQQCSRFHEISQFDDTKRSCRKRLAGHNQRRRKNQP 161
                        6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-3079146IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.66782159IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-3683163IPR004333Transcription factor, SBP-box
PfamPF031104.7E-3185158IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAKRSLEIKR EYERQEEYET EDEVGESEND DETVDYGGGG DGVEEEEEEE EQEEREEEVE  60
DRRKRALIRI VSGQRRGVPS NTLCCQADDC GVDLRAAKRY HRRHKVCERH AKAAFVFLGG  120
IEQRFCQQCS RFHEISQFDD TKRSCRKRLA GHNQRRRKNQ PDPPHTEDRR KPPNSKMNAS  180
SLKATEHSDD NELSFRGQSN IRHFRIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-32851581184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4613150.0AM461315.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X275163.4, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649307.11e-150PREDICTED: squamosa promoter-binding-like protein 3 isoform X1
TrEMBLD7U6P11e-149D7U6P1_VITVI; Uncharacterized protein
STRINGVIT_04s0210g00170.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.13e-37squamosa promoter-binding protein-like 12