PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01004860001

Common Name

VIT_07s0141g00250

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

CAMTA

Protein Properties

Length: 1244aa MW: 140302 Da PI: 6.351

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01004860001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	142.3	1.4e-44	223	307	34	118
CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+e+n++fqrr+yw+Leeel++ivlvhy+evk GSVIVT01004860001 223 LASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEDNENFQRRSYWMLEEELSHIVLVHYREVK 307 579*******************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	62.252	184	312	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.9E-51	188	307	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.5E-37	224	305	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.3E-4	663	750	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	9.62E-18	664	750	IPR014756	Immunoglobulin E-set
Pfam	PF01833	6.5E-7	664	749	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	1.5E-18	844	960	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.46E-13	847	956	No hit	No description
PROSITE profile	PS50297	18.218	847	968	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.49E-18	849	958	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.9E-7	869	960	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.022	897	926	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.885	897	929	IPR002110	Ankyrin repeat
SMART	SM00248	210	936	965	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.65E-7	1063	1118	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	17	1067	1089	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.078	1069	1088	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.071	1069	1097	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0039	1090	1112	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.597	1091	1115	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.6E-4	1093	1112	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0001077	Molecular Function	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1244 aa Download sequence Send to blast
MPKSVARRLE KLQRDFLWEG ANGGKKAHLV KWEVVCADKE KGGLGLRKLA CLNKALLGKW 60 IWRFARAKED IWKKVLEAKY GQEDFGWRTR KANGVFGVGV WKEILKEFAW CWENMVFKVG 120 KGNKIRFWID PWCGNNVPSQ SFPNLFSMAA QRNVTVEEMW DQNFGQGGWN LRFLRAFNDW 180 ELDMVGNLLV EFREHRVTLE EHSVIWKEGG DGLFRVKRAY SVLASGSLFL FDRKVLRYFR 240 KDGHNWRKKK DGKTVKEAHE RLKAGSIDVL HCYYAHGEDN ENFQRRSYWM LEEELSHIVL 300 VHYREVKGNR TSFNRIKETE GALINSQETE EVVPNSETDC SVSSSFPMNS YQMASQTTDT 360 TSLNSAQASE YEDAESAYNH QASSRLHSFL EPVMEKGDAL TAPYYPAPFS NDYQGKLDIP 420 GADFTSLAQE SSSKDSNSVG ISYELPKNLD FPSWEDVLEN CNAGVQSMPS QTPFSSTRAD 480 TMGIIPKQEN EILMQLLTDS FSRKQEFGSD PQGQDEWQTS EGYSAHLSKW PGDQKLHSDS 540 AYGLSTRFDI QEANCVDLLN SLEPGHAYPD GQKANYSSAL KQPLLDSSLT EEGLKKVDSF 600 NRWMSKELGD VNESHMQSRL SSSAAYWDTV ESENGVDESS ISPQGHLDTY MLGPSLSQDQ 660 LFSIIDFSPN WAYAGSEVKV LIMGKFLKGQ QDAEKCKWSC MFGEVEVPAE VISDGVLRCH 720 TPIHKAERVP FYVTCSNRLA CSEVREFEYR VNHIRDVDTA DVSSGSTSEI LLHMRFVKLL 780 SLAPSSNSGL SNEGDRFPLN SKINSLMEED NDEWEQMLML TSEEFSPEKA KEQLLQKLLK 840 EKLHVWLLQK AAEGGKGPNV LDEDGQGVLH FAAALGYDWA IPPTTAAGVS VNFRDVNGWT 900 ALHWAAFCGR ERTVPFLISQ GAAPGALTDP TPKYPAGRTP ADLASSNGHK GIAGYLAESA 960 LSAHLQSLHL KETKEADAAE ISGIKAVQTI SERSPTPIST GDLPLKDSLA AVCNATQAAA 1020 RIHQVFRVQS FQKKQQKEYD DGKFGMSDEH ALSLIAVKSR LGQHDEPVHA AATRIQNKFR 1080 SWKGRKDFLI IRQRIVKIQA HVRGHQVRKN YRKIIWSVGI LEKVILRWRR KGSGLRGFKP 1140 ETHTEGTSMR DISSKEDDYD FLKEGRKQTE ERLQKALARV KSMVQYPEAR DQYRRLLNVV 1200 TEIQETKVVY DRALNSSEEA ADFDDLIDLQ ALLDDDTFMP TAS*

Sequence ? help Back to Top

Protein Sequence Length: 1244 aa Download sequence Send to blast

MPKSVARRLE KLQRDFLWEG ANGGKKAHLV KWEVVCADKE KGGLGLRKLA CLNKALLGKW  60
IWRFARAKED IWKKVLEAKY GQEDFGWRTR KANGVFGVGV WKEILKEFAW CWENMVFKVG  120
KGNKIRFWID PWCGNNVPSQ SFPNLFSMAA QRNVTVEEMW DQNFGQGGWN LRFLRAFNDW  180
ELDMVGNLLV EFREHRVTLE EHSVIWKEGG DGLFRVKRAY SVLASGSLFL FDRKVLRYFR  240
KDGHNWRKKK DGKTVKEAHE RLKAGSIDVL HCYYAHGEDN ENFQRRSYWM LEEELSHIVL  300
VHYREVKGNR TSFNRIKETE GALINSQETE EVVPNSETDC SVSSSFPMNS YQMASQTTDT  360
TSLNSAQASE YEDAESAYNH QASSRLHSFL EPVMEKGDAL TAPYYPAPFS NDYQGKLDIP  420
GADFTSLAQE SSSKDSNSVG ISYELPKNLD FPSWEDVLEN CNAGVQSMPS QTPFSSTRAD  480
TMGIIPKQEN EILMQLLTDS FSRKQEFGSD PQGQDEWQTS EGYSAHLSKW PGDQKLHSDS  540
AYGLSTRFDI QEANCVDLLN SLEPGHAYPD GQKANYSSAL KQPLLDSSLT EEGLKKVDSF  600
NRWMSKELGD VNESHMQSRL SSSAAYWDTV ESENGVDESS ISPQGHLDTY MLGPSLSQDQ  660
LFSIIDFSPN WAYAGSEVKV LIMGKFLKGQ QDAEKCKWSC MFGEVEVPAE VISDGVLRCH  720
TPIHKAERVP FYVTCSNRLA CSEVREFEYR VNHIRDVDTA DVSSGSTSEI LLHMRFVKLL  780
SLAPSSNSGL SNEGDRFPLN SKINSLMEED NDEWEQMLML TSEEFSPEKA KEQLLQKLLK  840
EKLHVWLLQK AAEGGKGPNV LDEDGQGVLH FAAALGYDWA IPPTTAAGVS VNFRDVNGWT  900
ALHWAAFCGR ERTVPFLISQ GAAPGALTDP TPKYPAGRTP ADLASSNGHK GIAGYLAESA  960
LSAHLQSLHL KETKEADAAE ISGIKAVQTI SERSPTPIST GDLPLKDSLA AVCNATQAAA  1020
RIHQVFRVQS FQKKQQKEYD DGKFGMSDEH ALSLIAVKSR LGQHDEPVHA AATRIQNKFR  1080
SWKGRKDFLI IRQRIVKIQA HVRGHQVRKN YRKIIWSVGI LEKVILRWRR KGSGLRGFKP  1140
ETHTEGTSMR DISSKEDDYD FLKEGRKQTE ERLQKALARV KSMVQYPEAR DQYRRLLNVV  1200
TEIQETKVVY DRALNSSEEA ADFDDLIDLQ ALLDDDTFMP TAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4hb5_A	8e-13	853	956	25	122	Engineered Protein
4hb5_B	8e-13	853	956	25	122	Engineered Protein
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.30137	0.0	bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM434540	0.0	AM434540.2 Vitis vinifera contig VV78X210461.8, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019073077.1	0.0	PREDICTED: calmodulin-binding transcription activator 3 isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	F6HWM2	0.0	F6HWM2_VITVI; Uncharacterized protein
STRING	VIT_07s0141g00250.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP562	15	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	GSVIVT01004860001

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]