PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01004930001

Common Name

LOC100266054, VIT_01s0244g00010

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bHLH

Protein Properties

Length: 205aa MW: 23040.2 Da PI: 8.0681

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01004930001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.1e-09	52	99	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k K +L + ++Y+ksLq GSVIVT01004930001 52 SHSLAERARREKISERMKFLQSLVPGC----DKIIGKTLVLDEIINYVKSLQ 99 8***********************9....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.72E-8	46	103	No hit	No description
SuperFamily	SSF47459	2.36E-15	46	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.538	48	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-15	49	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	52	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-6	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MVRKRKKADF EEERDVEEKK GKAEKKRKKK VVKEVPSGFV HVRARRGEAT DSHSLAERAR 60 REKISERMKF LQSLVPGCDK IIGKTLVLDE IINYVKSLQN QVEFLVGKLA SISPMLIGHE 120 ANLDSSTLQS ENLCSFGPPL PSLLACNSTQ LNSYAETSLT SSFSLQQDHL SSVVSQNDGI 180 ILWDMDDQEQ SLLDQYGFSN RYSF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	28	KKRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.7662	0.0	fruit

Function -- GeneRIF ? help Back to Top
Cell elongation bHLH protein (CEB1) in grape embryos showed that this protein stimulates cell expansion and affects the expression of genes involved in cell expansion, including genes of auxin metabolism and signalling. [PMID: 23314819]

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ823168	0.0	JQ823168.1 Vitis vinifera basic helix-loop-helix (CEB1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002267465.1	1e-149	PREDICTED: transcription factor bHLH137
Swissprot	Q93W88	2e-43	BH137_ARATH; Transcription factor bHLH137
TrEMBL	F6HWP8	1e-147	F6HWP8_VITVI; Uncharacterized protein
STRING	VIT_01s0244g00010.t01	1e-148	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	2e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01004930001
Entrez Gene	100266054

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Nicolas P,Lecourieux D,Gomès E,Delrot S,Lecourieux F The grape berry-specific basic helix-loop-helix transcription factor VvCEB1 affects cell size. J. Exp. Bot., 2013. 64(4): p. 991-1003 [PMID:23314819] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]