PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01005301001
Common NameLOC100264251, VIT_00s0274g00070
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 465aa    MW: 50943.8 Da    PI: 5.7572
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01005301001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053563931254
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  GSVIVT01005301001 356 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 393
                        677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.88E-6354398No hitNo description
SuperFamilySSF474591.44E-11354410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-8358400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MADEFQTGVC GGTWWNPARN SFIGGPSPCS TALNDTGSFG WPTEMVDIKA RSCEESASVS  60
DSSIVFQDIQ KPQQPDSASG GGSMLMESTL QMMGFGLSSS STTTDWNPAL IRGSGRAESN  120
YHSMLQDDMS SRLNGMDSPQ IQKDWSPKNF STGGEDSSIC ALKPMNQGFA LDQQRLNSIN  180
SSGDSTVTCQ GFSSGFPMGS ASYGYPSTLL QGLYDPDPQP QQYLFDNRSM NYSSMANYRT  240
SMNELSPSWP KYSPYMKPSL PKQQPNSHLH FTNNTPFWNA SAAALNDIRA SFFPSPQSQF  300
LTPTFEEKPN CSKLTTKLNT EEVRDSGSVL KKSSAEPAFK RPRIETPSPL PTFKVRKEKL  360
GDRITALQQL VSPFGKTDTA SVLHEAIEYI KFLHDQVSVL STPYMKNGAP IQPQQTSEKL  420
KDTEGSKQDL RSRGLCLVPI SSTFPVANET TADYWTPTFG GTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4587560.0AM458756.2 Vitis vinifera contig VV78X081674.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635184.10.0PREDICTED: transcription factor bHLH112 isoform X1
TrEMBLD7SSM50.0D7SSM5_VITVI; Uncharacterized protein
STRINGVIT_00s0274g00070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-73bHLH family protein