PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01005342001
Common NameVIT_00s1624g00010
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 94aa    MW: 11133.2 Da    PI: 11.6886
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01005342001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.12e-333386255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       prlrWtp+LH++Fv+ave+LGG+++AtPk il++m+vkgL+++h+kSHLQ+YR+
  GSVIVT01005342001 33 PRLRWTPDLHRCFVHAVERLGGEDRATPKMILQIMDVKGLSISHIKSHLQMYRS 86
                       8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.1632989IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-322988IPR009057Homeodomain-like
SuperFamilySSF466891.97E-163187IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-253387IPR006447Myb domain, plants
PfamPF002491.7E-83485IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009010anatomyseed
PO:0025501developmental stagefruit formation stage
PO:0025502developmental stagefruit ripening stage
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MRTLRRPRRL DSLLSDISLK SSMVRPYVRS KLPRLRWTPD LHRCFVHAVE RLGGEDRATP  60
KMILQIMDVK GLSISHIKSH LQMYRSMKHE QIVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-213489358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-213489358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-213489358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-213489358Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4740683e-80AM474068.2 Vitis vinifera contig VV78X087148.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647532.13e-62PREDICTED: putative two-component response regulator ARR21
SwissprotQ700D94e-30MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A438JGK09e-61A0A438JGK0_VITVI; Putative Myb family transcription factor
TrEMBLF6H8E32e-61F6H8E3_VITVI; Uncharacterized protein (Fragment)
STRINGVIT_00s1624g00010.t013e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.17e-35G2-like family protein