PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01005747001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 486aa    MW: 52829.5 Da    PI: 7.8898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01005747001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-17251255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  GSVIVT01005747001  2 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 51
                       59*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.089259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-29258IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-21259IPR016177DNA-binding domain
SMARTSM003802.5E-33265IPR001471AP2/ERF domain
PfamPF008471.4E-10251IPR001471AP2/ERF domain
CDDcd000184.09E-29258No hitNo description
PRINTSPR003673.2E-9314IPR001471AP2/ERF domain
PRINTSPR003673.2E-92541IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MRYRGVRRRP WGRYAAEIRD PQSKERRWLG TFDTAEEAAC AYDCAARAMR GVKARTNFVY  60
PTSPPHPATE HLLPSFNFSK QSQPSIRDLP ARHFSPTNWS SFSNPHAADF SASAPHPSSS  120
LNMLLLRDFL NSSSTSSLSS PHLPFNDHIP YANASSPSLA PSSFSGCSSV NPSTNATPRA  180
GDATHNNTTA FPGSCPSPSH VEDHLTYGLG GSTGASQGDD MDFFPSEPSD SGLLEEIISR  240
FFPKTSTKFC HPTKTLNCNE ESVGAAASHL GVNHILHDAR RGLDQNDRVG CCFDCQGAPH  300
QFENFNGTSG SQAIPVPNQL PMNFHAAPDS MLDDIFQYPE LLNVIAARPY PQFHSFLSLS  360
SSKRRFRFSG QVLCGVAGHS RASRRTDRET AMETEEMTNK DMKVEISAVA EGLGVPVLTR  420
QPSNAKSNCL CSPTTHAGSF RCRLHRAPSL QRTKSMDSAS QRESFPKVNS ASGNTTNNAN  480
TVEAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-192581471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.138980.0inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4383080.0AM438308.2 Vitis vinifera contig VV78X081361.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271778.20.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA5AWM30.0A5AWM3_VITVI; Uncharacterized protein
STRINGVIT_00s0291g00030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.16e-15ERF family protein