PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01006140001
Common NameVIT_00s2480g00010
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 65aa    MW: 7366.05 Da    PI: 10.4172
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01006140001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00051940223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       kC +Cgk   +  +L rHi ++
  GSVIVT01006140001 19 KCLNCGKQLMQMASLLRHICSC 40
                       8******************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MFILWDKLAR ERLLKMVIKC LNCGKQLMQM ASLLRHICSC WIPSSVGSIN KTTHWFCKGA  60
AIIK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4495928e-74AM449592.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X048754.22, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7U7207e-39D7U720_VITVI; Uncharacterized protein
STRINGVIT_00s2480g00010.t011e-39(Vitis vinifera)