PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01006588001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 230aa    MW: 25717.6 Da    PI: 10.157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01006588001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12169215455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR+++ ++f  L  ++P +     kK +Ka++L  A++Y+k+Lq
  GSVIVT01006588001 169 DHVIAERKRREKLTQRFIALSAIVPGL-----KKTDKASVLGDAIKYLKQLQ 215
                        6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.913165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10169215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16169225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-16170225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-12170219No hitNo description
SMARTSM003531.8E-14171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNSHRRFGIE DPTFIHQYQM QSFGNPVDHG FNFQSFSSDS YSSYLSFSPK TTLSSAVENF  60
QTDIERTAKQ LKTNSWESST SNRITPKASS SSSSQLLSFG NSNSPLPTDV QNFHENLDCT  120
VKPKDEAASH GNMNFASVIS KSSYGNQNHG HGTKRVGTPI TRNPLNNQDH VIAERKRREK  180
LTQRFIALSA IVPGLKKTDK ASVLGDAIKY LKQLQERVKT LEEQTTKKTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14164218657Transcription factor MYC2
5gnj_B3e-14164218657Transcription factor MYC2
5gnj_E3e-14164218657Transcription factor MYC2
5gnj_F3e-14164218657Transcription factor MYC2
5gnj_G3e-14164218657Transcription factor MYC2
5gnj_I3e-14164218657Transcription factor MYC2
5gnj_M3e-14164218657Transcription factor MYC2
5gnj_N3e-14164218657Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178ERKRRE
2174179RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.187140.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4646730.0AM464673.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X054508.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635290.11e-164PREDICTED: transcription factor bHLH25, partial
TrEMBLA0A438C3T41e-148A0A438C3T4_VITVI; Transcription factor bHLH25
STRINGVIT_00s0384g00020.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-30bHLH family protein