PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007007001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 188aa    MW: 21649.6 Da    PI: 7.0289
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007007001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS168.55.5e-5241181232373
               GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                        +sl+Pkvv++veqe+++n++ Fl rf+e+l+yy+a+f+s+++  pr++++ri+ E+++++r+ivn++acegaer+erhe l+kWr+r+ +aG
  GSVIVT01007007001  41 WSLQPKVVTLVEQESNTNTSAFLPRFVETLDYYTAMFESIDVARPRNDKQRINAEQHCVARDIVNIIACEGAERVERHELLGKWRSRFLMAG 132
                        89****************************************************************************************** PP

               GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                        F+p+pls+++   +k +l++++ + + ++e++g+l+lgWk+r L + +aW
  GSVIVT01007007001 133 FNPYPLSSSVSLAIKDMLKEYSPN-FWLQERNGALYLGWKNRILATSCAW 181
                        **********************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.0851163IPR005202Transcription factor GRAS
PfamPF035141.9E-4941181IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MQTSEEHQSS GGIHRLYHQP VQELQPYCLW SQFLESPSKG WSLQPKVVTL VEQESNTNTS  60
AFLPRFVETL DYYTAMFESI DVARPRNDKQ RINAEQHCVA RDIVNIIACE GAERVERHEL  120
LGKWRSRFLM AGFNPYPLSS SVSLAIKDML KEYSPNFWLQ ERNGALYLGW KNRILATSCA  180
WVLRLDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-1843184240380Protein SCARECROW
5b3h_D2e-1843184240380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.115940.0fruit
Vvi.25400.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4391160.0AM439116.2 Vitis vinifera contig VV78X211539.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272401.11e-97PREDICTED: scarecrow-like protein 21
RefseqXP_010647042.11e-97PREDICTED: scarecrow-like protein 21
SwissprotQ9S7H53e-73SCL21_ARATH; Scarecrow-like protein 21
TrEMBLA0A438DDW73e-96A0A438DDW7_VITVI; Scarecrow-like protein 13
TrEMBLA0A438HRU23e-96A0A438HRU2_VITVI; Scarecrow-like protein 13
TrEMBLF6HRV63e-96F6HRV6_VITVI; Uncharacterized protein
STRINGVIT_00s0463g00020.t015e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1489644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.11e-75SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]