PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007065001
Common NameVITISV_035498
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 258aa    MW: 28427.9 Da    PI: 6.8035
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007065001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.43.9e-341973155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  GSVIVT01007065001 19 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4851676IPR017930Myb domain
SuperFamilySSF466895.55E-181873IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-321874IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-261974IPR006447Myb domain, plants
PfamPF002499.0E-102172IPR001005SANT/Myb domain
PfamPF143791.2E-23105151IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDPINGGNSL NNNPSLASKQ RLRWTHELHE RFVDAVAQLG GPDRATPKGV LRVMGVQGLT  60
IYHVKSHLQK YRLAKYLPDS SSDGKKADKK ESGDMLSSLD GSSGMQITEA LKLQMEVQKR  120
LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ RLSGVITETD PATPAPTSEG PLLDKAAKET  180
APAKSLSIDE SFSSHHEPLT PDSGCHMVLT HQILESSLSS SFHQPHSVFL NRDQFDPQAG  240
ISISNEDQLE KVPSSNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-241976259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-241976259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-241976259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-241976259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-241976259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-241976259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-241976259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-241976259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.35930.0flower| inflorescence| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3837170.0FQ383717.1 Vitis vinifera clone SS0ABG19YO09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647085.11e-178PREDICTED: myb family transcription factor PHL7 isoform X1
RefseqXP_010647087.11e-178PREDICTED: myb family transcription factor PHL7 isoform X1
RefseqXP_019074066.11e-178PREDICTED: myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW01e-125PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA5C9661e-178A5C966_VITVI; Uncharacterized protein
STRINGVIT_00s0475g00040.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-86G2-like family protein