PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007798001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 174aa    MW: 20538.3 Da    PI: 11.3732
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007798001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.28.2e-086795335
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgk 35
                       y+GVr++   ++Wv+e+r+p   +k+ r++lg+
  GSVIVT01007798001 67 YRGVRRRN-GNKWVCELREP---NKKSRIWLGT 95
                       9****887.9*********8...347******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.5616695IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-766100IPR016177DNA-binding domain
SMARTSM003800.009166119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-126695IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MDFFNQFCNS YPFSLDSHSV SSPESSSASD WQTRRTIQSD EEVLRASNRP KKRAGRRKFK  60
ETQHPMYRGV RRRNGNKWVC ELREPNKKSR IWLGTKNGQH MHWRRFWAAH ALKKEKKSGD  120
KRGNRAPNRP FFNLSSSLFV FHLRLCSTIF TANLPPSIFN PEFFFYKKSE TIF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4276911e-158AM427691.1 Vitis vinifera contig VV78X017548.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081995.12e-64PREDICTED: dehydration-responsive element-binding protein 1D, partial
TrEMBLA0A438BZA94e-57A0A438BZA9_VITVI; Dehydration-responsive element-binding protein 1E
TrEMBLA5BVG94e-57A5BVG9_VITVI; CBF-like transcription factor
TrEMBLF6HUI03e-57F6HUI0_VITVI; Uncharacterized protein
STRINGVIT_02s0025g04460.t016e-58(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-24ERF family protein