PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007832001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family E2F/DP
Protein Properties Length: 816aa    MW: 93187.4 Da    PI: 9.5131
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007832001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP70.61.8e-22459524171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        rk+ksL+ll+++fl+l+++   + + l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++wkg
  GSVIVT01007832001 459 RKQKSLGLLCSNFLSLYNRDGVEPIGLDDAASRL---GV--ERRRIYDIVNVLESVGVLARKAKNQYSWKG 524
                        79*****************999************...**..****************************98 PP
2E2F_TDP75.55.2e-24590670171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                        r+eksL+lltq+f+kl+ +s+ + ++l+e+a+ L+ +      +++k+RR+YDi+NVL+++nliek     ++k+++rw g
  GSVIVT01007832001 590 RREKSLGLLTQNFVKLFLCSNVDLISLEEAARILLGDgqnssIMRTKVRRLYDIANVLSSMNLIEKtnqteNRKPAFRWLG 670
                        689**************************************999**********************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.777100134IPR002885Pentatricopeptide repeat
PfamPF138120.0081124181IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.251135169IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.7E-4138170IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.596190224IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.6E-6197226IPR002885Pentatricopeptide repeat
PfamPF130415.1E-11198236IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.255225259IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.8E-7227260IPR002885Pentatricopeptide repeat
PfamPF130414.4E-18259308IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.649260294IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.4E-8263295IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.978295329IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.1E-10298331IPR002885Pentatricopeptide repeat
PfamPF130411.5E-11329376IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.348330364IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.7E-6333365IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.377365402IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.10.10.101.7E-25455525IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.27E-15458522IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-27459524IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.4E-19460524IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-22588671IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-32590670IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.0E-19592670IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.84E-13592671IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008380Biological ProcessRNA splicing
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MLILANRLSS LRPTEPLLKP ISYNYNLTTT TSPPSPPQDA TIVNLVLKTD SQTLTRTLEK  60
YPVEWTPNLV DRVLKLLWNH GPKALQFFKS LDYHPTYAHV SSSFDHAIDI AGRLRDYKTL  120
WTLVDRMRTR RLGPNPKTFA IITERYVSAG KPDRAIKIFF SMHEHGCVQD LNSFNTILDV  180
LCKSKRVEMA DNKLFKVFRG FFRAGQLKEA WEFFLQMKKR KCEIDVVTYT TVVHGFGVAG  240
EVRKAQRVFN EMIGEGVLPS VATYNAFIQV LCKKDNVENA ISVFEEMLRK GYMPNSTTYN  300
VVIRGLCHVG RMEKAMEFMA RMKDDECEPN VQIYNVVIRY FCDAEEIEKG LNVFEKMGDA  360
DCLPNLDTYN ILISAMFVRK KSDYLLTAGK LLIEMVERGF CKRNSEIAEQ MWPSSSSAQA  420
VKLSSIQIVK VESTRSSWKM TLSSSTIQES ASHHRTYSRK QKSLGLLCSN FLSLYNRDGV  480
EPIGLDDAAS RLGVERRRIY DIVNVLESVG VLARKAKNQY SWKGFGAIPK ALEELREEGL  540
RENFHTFDSN NSAKVDDEDE RFSNPNTGSQ QDKSNPSSKL NLNVFFTDNR REKSLGLLTQ  600
NFVKLFLCSN VDLISLEEAA RILLGDGQNS SIMRTKVRRL YDIANVLSSM NLIEKTNQTE  660
NRKPAFRWLG MRGKSENGSL SVLNLNESKK RTFGTEITNI SFKRNKMASS VEGNSNQNTK  720
MQWQMQVKHE NLENGIERSD FEKGPKQSSK SYQFGPFAPV SVQDTVRQVR DWESLASTYR  780
PQYHSQALRD LFAHYMEAWK TWYSEVAGKE PIQIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A1e-518340014431pentatricopeptide repeat protein dPPR-U10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4768990.0AM476899.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X257382.43, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498I5U60.0A0A498I5U6_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24741634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-121DP-E2F-like 1