PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007914001
Common NameLOC100262138, VIT_17s0000g06930
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 386aa    MW: 42207.8 Da    PI: 9.2609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007914001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.4e-16190235555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn+ ErrRRdriN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  GSVIVT01007914001 190 HNQSERRRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 235
                        9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-19183247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.796185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13190235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.68E-16190239No hitNo description
Gene3DG3DSA:4.10.280.109.5E-19190245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGLFSRSNYE VAELTWENGQ LAMHGLGGLL PTAPTKPTWG RAGDTLESIV HQATCHNQNS  60
NFIHHAQNLA NMKSTVGSSA HVQTGNQGLM KKRTRSDSAH CGRNFSTNVH EAERADRSAC  120
ASASATFCRD NETTMMTWPS SESPRSLKAK TTDEDSACHG GSENQDEDRE TKTQTGRSHS  180
TRRSRAAAIH NQSERRRRDR INQKMKTLQK LVPNSSKTDK ASMLDEVIEY LKQLQAQVQM  240
MSVRNMPQMM MPMGMQQQLQ MSLLARMGMG VGLGMGMGML DMSAVPRAAP QTLPSLLHAN  300
PVVAATPTFV PPPFVVPPMM PSSSQPKSDA GANAAVPLQD PYCAFLAQSM NMDLYHKMAA  360
LYRQHVNHKA QPTSSPPHSN HDLGD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.69960.0inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3843050.0FQ384305.1 Vitis vinifera clone SS0AAG20YB06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082107.10.0PREDICTED: transcription factor PIF7 isoform X3
TrEMBLF6GT270.0F6GT27_VITVI; Uncharacterized protein
STRINGVIT_17s0000g06930.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-39bHLH family protein