PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008030001
Common NameVIT_17s0000g05950
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 91aa    MW: 10328.7 Da    PI: 9.3646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008030001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.7e-0814551454
                       HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                       d+iN+ + +L+ llP+ + + +s+  s   iL++++ YIk L
  GSVIVT01008030001 14 DEINDLILKLQALLPHsNQRRTSTGASAWRILKETCSYIKRL 55
                       68**************7768888889999***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.753155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508269.641090IPR004012RUN domain
Gene3DG3DSA:4.10.280.108.7E-91472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-51455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-91471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSTQRARASR VTDDEINDLI LKLQALLPHS NQRRTSTGAS AWRILKETCS YIKRLHREVG  60
DLSERLSQLL DSLDNINGVE VEQLRSLLQR *
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4856908e-84AM485690.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X269834.21, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087225.12e-27transcription factor ILI5-like
SwissprotQ9LJX15e-23PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A438BUK73e-57A0A438BUK7_VITVI; Transcription factor PRE5
TrEMBLD7SID53e-57D7SID5_VITVI; Uncharacterized protein
STRINGVIT_17s0000g05950.t015e-58(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1320335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-25bHLH family protein