PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008046001
Common NameLOC100250047, VIT_17s0000g05810
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 606aa    MW: 65179 Da    PI: 7.6893
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008046001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-30257316159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r aed +++++tYeg+Hnh+
  GSVIVT01008046001 257 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRFAEDMSILITTYEGTHNHP 316
                        58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-30244318IPR003657WRKY domain
SuperFamilySSF1182905.1E-27250318IPR003657WRKY domain
PROSITE profilePS5081128.392252318IPR003657WRKY domain
SMARTSM007744.8E-35257317IPR003657WRKY domain
PfamPF031061.1E-26258316IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MNKEERAMEA ALRRSGHGVV VKEERRPEAP CDDDEGCRDK AAAKADKTKS SSPRREDLNC  60
SSVQLPAISK MERSISSAEP DSGASSSSHK DQDDQLESAK AEMGEVREEN QRLRMYLDQI  120
MKDYKTLQMQ FYDVVRQEAK ESTEKASILQ IEEPEFVSLS LGRVSSDPKK DEKNKTTSKV  180
EDDGVKGGLS LGLDCKFEVL NPSPENSFGG PKEAAGESWP PSKSLKTMRT GDDEISQQNP  240
AKRCRVSVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTVAPSCP VRKQVQRFAE  300
DMSILITTYE GTHNHPLPYS ATAMASTTSA AASMLMSGSS SSQSGSGSCP LSATSADLHG  360
VNFYLSDNSK SKQFYSINSS LSAVSSNPTI TLDLTTASSS SSSSSHFNRL SSNYPPPRFP  420
STGFNFSSSE SNSLPISWSN GLLSYGSTTT TQPYNRNHTG SQNSGRHTQE NFFHPHVQKN  480
NPAPVQQPLP DPIAAATKAI ASDPSFQSAL AAALTSIMGA NGGTHANHSG GEAFGQKLMW  540
GSESLPAVST YQSTSKGNGC ASSYLNKSPP TNSQPGSLMF LPPALPFSTS KNASASPAEN  600
REHTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-212573181777Probable WRKY transcription factor 4
2lex_A3e-212573181777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4713350.0AM471335.2 Vitis vinifera contig VV78X018825.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663394.10.0PREDICTED: probable WRKY transcription factor 72 isoform X2
SwissprotA0A3Q7GFB51e-141WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLD7SIE70.0D7SIE7_VITVI; Uncharacterized protein
STRINGVIT_17s0000g05810.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-81WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]