PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008139001
Common NameLOC100251943, VIT_17s0000g05000
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28029.8 Da    PI: 8.431
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008139001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+gklye++s
  GSVIVT01008139001  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFCS 59
                       79***********************************************96 PP
2K-box100.13.2e-338717413100
              K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                         ++s++qe+ kLk ++e Lqr+qRhllGedL++L+ keL+qLe+qLe slk+iRs+K++ +l+q+ +lq+ke++l e+n+aLr+klee
  GSVIVT01008139001  87 LTQSSYQEYLKLKTRVEVLQRSQRHLLGEDLDPLNTKELEQLEHQLEMSLKQIRSTKTQNMLDQLADLQNKEHMLIEANNALRRKLEE 174
                        4799*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.983161IPR002100Transcription factor, MADS-box
CDDcd002652.48E-46278No hitNo description
SuperFamilySSF554553.53E-33280IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.28188178IPR002487Transcription factor, K-box
PfamPF014863.2E-2889172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFCSG  60
PSMAKTLEKY QKCSYGALEA SQPVYELTQS SYQEYLKLKT RVEVLQRSQR HLLGEDLDPL  120
NTKELEQLEH QLEMSLKQIR STKTQNMLDQ LADLQNKEHM LIEANNALRR KLEESNGKHP  180
LQQSWEAAGN SALYSRLPAQ SEGFFQPLER NSTLEMGYNA AGSNEITLAA PSQNDNGFGP  240
GWMLWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A7e-30751721101Developmental protein SEPALLATA 3
4ox0_B7e-30751721101Developmental protein SEPALLATA 3
4ox0_C7e-30751721101Developmental protein SEPALLATA 3
4ox0_D7e-30751721101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.205840.0inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263039.10.0PREDICTED: MADS-box protein CMB1 isoform X2
SwissprotQ8LLR21e-126MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLD7SIM70.0D7SIM7_VITVI; Uncharacterized protein
STRINGVIT_17s0000g05000.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-104MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]