PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008140001
Common NameLOC100257072, VIT_17s0000g04990
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28065.8 Da    PI: 8.7634
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008140001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.23.3e-31959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gklyeys+
  GSVIVT01008140001  9 KRIENKVNRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYEYST 59
                       79***********************************************96 PP
2K-box95.77.2e-32761742100
              K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                        ++s+  +++ + + s++ e+akLk+++e Lq++qR+++GedL+sLslkeLq+LeqqL++slk+ R++Kn+l++e+++el kk k+lqee+  
  GSVIVT01008140001  76 AQSQLIATDLESQGSWTLEYAKLKARMEVLQKSQRNFMGEDLDSLSLKELQNLEQQLDNSLKSTRTRKNQLMYESLSELHKKGKALQEEHDL 167
                        566666667777899***************************************************************************** PP

              K-box  94 Lrkklee 100
                        L++k++e
  GSVIVT01008140001 168 LTAKVQE 174
                        ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.955161IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.46E-42279No hitNo description
SuperFamilySSF554559.94E-34290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-31323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.3E-2787172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.5788178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVQLKR IENKVNRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLYEYSTD  60
SCMERILERY ERYAYAQSQL IATDLESQGS WTLEYAKLKA RMEVLQKSQR NFMGEDLDSL  120
SLKELQNLEQ QLDNSLKSTR TRKNQLMYES LSELHKKGKA LQEEHDLLTA KVQEKEKEQA  180
EQAQWNQQNQ DLDSPSFLLQ QPLHALNISG NCLARDSGDD QGIPPQNRTN TPLPAWMLRH  240
VNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-21185184MEF2 CHIMERA
6byy_B1e-21185184MEF2 CHIMERA
6byy_C1e-21185184MEF2 CHIMERA
6byy_D1e-21185184MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.196670.0inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4443984e-97AM444398.2 Vitis vinifera contig VV78X151589.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263017.10.0PREDICTED: truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-111AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLD7SIM81e-179D7SIM8_VITVI; Uncharacterized protein
STRINGVIT_17s0000g04990.t011e-180(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-95AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]