PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01008156001

Common Name

VIT_17s0000g04850

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Dof

Protein Properties

Length: 256aa MW: 27908.2 Da PI: 9.1287

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01008156001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.7e-39	25	85	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ GSVIVT01008156001 25 QNQALKCPRCESLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSK 85 57899****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	25	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-33	27	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.488	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MQDIHSMGAG GGRIFGGDRR LRPHQNQALK CPRCESLNTK FCYYNNYNLS QPRHFCKSCR 60 RYWTKGGVLR NVPVGGGCRK TKRSKAKSSS DAPRERKSNS HSSSESSSLT ATTTAAATTA 120 TTEAVSAPSS NAASTLMTGS NDPAALGFNI SDISPFKYQE QEITAGFLDQ TVQVELSALQ 180 NRSNHGGFPS LDWQTSGDQG IFDLPGNVDQ GYWTQSQCVL FSPLLGFSFF LSNVFPIKLI 240 KYRKNIECFV CLDAS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.15178	0.0	bud\| fruit\| inflorescence\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM436549	0.0	AM436549.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X263908.20, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002267092.1	1e-117	PREDICTED: dof zinc finger protein DOF5.4
Swissprot	Q8LDR0	9e-45	DOF54_ARATH; Dof zinc finger protein DOF5.4
TrEMBL	F6GTE9	1e-147	F6GTE9_VITVI; Uncharacterized protein
STRING	VIT_17s0000g04850.t01	1e-148	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	4e-32	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	GSVIVT01008156001

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu P,Chen H,Ying L,Cai W AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana. Sci Rep, 2016. 6: p. 27705 [PMID:27297966] Ramirez-Parra E, et al. The transcription factor OBP4 controls root growth and promotes callus formation. New Phytol., 2017. 213(4): p. 1787-1801 [PMID:27859363] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701]