PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008284001
Common NameLOC100245622, VIT_17s0000g03720
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 228aa    MW: 24644.3 Da    PI: 7.9337
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008284001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.95e-314107199
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++C+l+p++     p+ q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG++g+++++++ql
  GSVIVT01008284001   4 SCNGCRVLRKGCNDSCTLRPCLqwiknPDFQANATVFLAKFYGRAGLINLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSAGLLWSGSWQL 95 
                        6******************************************************************************************* PP

             DUF260  88 eqlkaelallke 99 
                        +q+++e++l ++
  GSVIVT01008284001  96 CQSAVEAVLSGA 107
                        *****9988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6813109IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCNDSCT LRPCLQWIKN PDFQANATVF LAKFYGRAGL INLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSAGLLWS GSWQLCQSAV EAVLSGAPIM QISAESAVSS  120
MSPPLKAGDI RHVSKDENSA GSSHELHKVK SRGRFKRSKA DSMSVETVEA SLVKPTRDGS  180
DVELELTLGL EPIPKVQKAC AVVREKEEMA GSEDDTCKVE LALEYSG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.155960.0bud| fruit| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4746241e-158AM474624.2 Vitis vinifera contig VV78X005056.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276899.11e-159PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-82LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A438JZ911e-157A0A438JZ91_VITVI; LOB domain-containing protein 41
TrEMBLF6GTL01e-157F6GTL0_VITVI; Uncharacterized protein
STRINGVIT_17s0000g03720.t011e-158(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-85LOB domain-containing protein 41