PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008560001
Common NameVIT_17s0000g01230
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 26794.7 Da    PI: 10.4179
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008560001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.3e-28959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++ rqvtfskR+ng+lKKA+ELS+LCdaeva++ifs++gk y ++s
  GSVIVT01008560001  9 KRIENSTSRQVTFSKRKNGLLKKAFELSILCDAEVALLIFSPSGKAYQFAS 59
                       79**********************************************986 PP
2K-box82.11.3e-2782172999
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        + +++ e +  e+++L++ i++L+ +++hl GedL++L +keL+qLe+qL++++++iR+kK +++ e+i+ l+k++++lqe+n++L+kk++
  GSVIVT01008560001  82 QRSRTIEFWMSEIDNLRRTIDTLEAKHKHLAGEDLSTLGMKELKQLERQLKNGVERIRAKKRRIISEHISLLKKRQRALQEDNTRLQKKVK 172
                        56778899********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.015161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-32284IPR002100Transcription factor, MADS-box
CDDcd002651.36E-39271No hitNo description
PRINTSPR004046.7E-30323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.9E-2485171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.27787179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKVELKR IENSTSRQVT FSKRKNGLLK KAFELSILCD AEVALLIFSP SGKAYQFASH  60
DMDRSIARYR NEVGLMEFNN YQRSRTIEFW MSEIDNLRRT IDTLEAKHKH LAGEDLSTLG  120
MKELKQLERQ LKNGVERIRA KKRRIISEHI SLLKKRQRAL QEDNTRLQKK VKLHEANLNT  180
RAFGAEECDA FGRAVAAVVL AVHMTGPGYE KDGQMGSKSH HQTARMLADQ DGGDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-23186180MEF2C
5f28_B1e-23186180MEF2C
5f28_C1e-23186180MEF2C
5f28_D1e-23186180MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.84680.0cell culture| inflorescence| pedicel| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4853012e-96AM485301.2 Vitis vinifera contig VV78X211751.53, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081901.11e-139PREDICTED: MADS-box transcription factor 23 isoform X2
TrEMBLD7SH011e-173D7SH01_VITVI; Uncharacterized protein
STRINGVIT_17s0000g01230.t011e-174(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.16e-50AGAMOUS-like 20