PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01008570001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NF-YC

Protein Properties

Length: 216aa MW: 23729.1 Da PI: 4.7148

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01008570001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.8	4.8e-13	1	35	4	35
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkaded 35 +fw++q ie+++dfknh+lPlarikki+kaded GSVIVT01008570001 1 MFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADED 35 5898887789************************9 PP
2	NF-YC	39	1.7e-12	35	67	70	102
NF-YC 70 krrtlkksdiaaavtrtdifdflvdivprdelk 102 +rrtl+k+diaaa+trtdifdflvdivprde+k GSVIVT01008570001 35 DRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 67 69****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.56E-12	7	57	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.7E-8	12	35	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.1E-8	36	63	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MFWSYQRQEI EQVNDFKNHQ LPLARIKKIM KADEDRRTLQ KNDIAAAITR TDIFDFLVDI 60 VPRDEIKDEG GLGMVGSTAS GVPYYYPPMG QPAPGVMMGR PAVPGVDPGV YVQPPSQAWQ 120 SVWQTAEDGS YGSGGSSGQG NLDGQGVGFL PPPPIIVYLF GEEGFDLRPG DEKGVEVRQP 180 VMLFSSLCCT RIASTCKNID ILSKRPLWML WCFPA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	41	RRTLQKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.12631	0.0	bud\| flower\| fruit\| inflorescence\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ392138	0.0	FQ392138.1 Vitis vinifera clone SS0AFA7YF12.
GenBank	FQ395872	0.0	FQ395872.1 Vitis vinifera clone SS0AFA13YG24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002284041.1	3e-85	PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1
Refseq	XP_010663766.1	3e-85	PREDICTED: nuclear transcription factor Y subunit C-1 isoform X2
Swissprot	Q9SMP0	6e-63	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A5AFH0	8e-84	A5AFH0_VITVI; Uncharacterized protein
TrEMBL	F6GSW8	1e-83	F6GSW8_VITVI; Uncharacterized protein
STRING	VIT_17s0000g01130.t01	2e-84	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-63	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	GSVIVT01008570001

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]