PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008806001
Common NameVIT_18s0001g01760
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 21559.7 Da    PI: 7.8065
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008806001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.93.1e-141312151
                       HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
                       +KKA+E+ vLCda v+++if+s+gk++ey+s
  GSVIVT01008806001  1 MKKAKEITVLCDAHVSLVIFASSGKMHEYCS 31
                       8****************************96 PP
2K-box78.12.2e-2643139197
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                        y+k+sgk+l++ak+e+l++el+++kke++++q e+Rhl+Ged++sL +keL+ +e++Le +l ++R+k++e++++  ++++  e+e+++ n 
  GSVIVT01008806001  43 YHKQSGKRLWDAKHENLNNELDRIKKENDSMQIELRHLKGEDISSLHHKELMAIEDALEIGLASVRNKQMEFYKMVKKNQRILEEENKHLNY 134
                        8999**********************************************************************************999998 PP

              K-box  93 aLrkk 97 
                          +++
  GSVIVT01008806001 135 IVHHQ 139
                        77765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003193.2E-9129IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-19168IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.292133IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-4132IPR002100Transcription factor, MADS-box
PfamPF014862.5E-1854133IPR002487Transcription factor, K-box
PROSITE profilePS5129713.80856142IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MKKAKEITVL CDAHVSLVIF ASSGKMHEYC SPSTTLIDIL DRYHKQSGKR LWDAKHENLN  60
NELDRIKKEN DSMQIELRHL KGEDISSLHH KELMAIEDAL EIGLASVRNK QMEFYKMVKK  120
NQRILEEENK HLNYIVHHQG MPMEAGNVRE VESGYHQRAV RDYNPQMPFA FRVQPIQPNL  180
QERI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.79810.0bud| fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0597500.0DQ059750.1 Vitis vinifera putative PISTILLATA-like MADS-box protein (MADS9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267875.11e-135agamous-like MADS-box protein MADS9
SwissprotQ0HA251e-137MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A438EU641e-123A0A438EU64_VITVI; Floral homeotic protein PMADS 2
STRINGVIT_18s0001g01760.t011e-136(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53021222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-68MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]