PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008961001
Common NameVIT_18s0001g04500
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 282aa    MW: 31770 Da    PI: 9.5056
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008961001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.52.1e-16211258553
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                        +r++r++kNRe+A rsR+RK+a++ +Le +v +L++eN+ L  +l+el+
  GSVIVT01008961001 211 RRQKRMIKNRESAARSRARKQAYTNHLEHEVHQLKKEND-LLIRLKELQ 258
                        69************************************6.666888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-8207260IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.277209251IPR004827Basic-leucine zipper domain
CDDcd147073.76E-23211261No hitNo description
PfamPF001706.9E-14211258IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.75E-11211254No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-13211253No hitNo description
PROSITE patternPS000360214229IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDLRRMASAN RSQQSKFPQG YLYHLIFNEL QTQLGNVGKP LSSMYLDELL KHVISAEKGQ  60
YFMQNPAASS SSSSSSPASL FLGNFNLNGV LDKKTVEEVW EEILHHQHLS GADNGPIQHL  120
STLGETTLEE FLVRAGLPVE AAQQQQPGVL DSSFHVSESV FEGPAIEIGY SKNQMAMSTA  180
VPAVTTSSPN SPVAVERKRW FSDEMMKTIE RRQKRMIKNR ESAARSRARK QAYTNHLEHE  240
VHQLKKENDL LIRLKELQMR WSLNPTPGPK YQLRRTSSCL F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4870350.0AM487035.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X091414.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284298.30.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3
RefseqXP_019071965.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLF6H0P10.0F6H0P1_VITVI; Uncharacterized protein
STRINGVIT_18s0001g04500.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1630733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.31e-44bZIP family protein