PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009046001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 324aa    MW: 36064.2 Da    PI: 9.0039
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009046001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.7e-07116135120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++C++C+k+F+r  nL+ H+
  GSVIVT01009046001 116 FSCHICNKTFNRYNNLQMHM 135
                        89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-5111138No hitNo description
Gene3DG3DSA:3.30.160.605.7E-5116135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.699116143IPR007087Zinc finger, C2H2
SMARTSM003550.083116138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SMARTSM00355110163195IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.4E-4196220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140200220IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEPSDIPFSS NPSACSSSHD NIYNELLNLF PDTRPNSLEP LPLPSSLLCS PKAVPLEGNT  60
KASNEDTGDV TVTLCIGLPD NKDGSKNAVD KRDSDIAATQ YWIPTPAQIL IGFTHFSCHI  120
CNKTFNRYNN LQMHMWGHGS QYRKGPESLK GTQPRAVLSI PCYCCTQGCK NNIDHPRAKP  180
LKDFRTLQTH YKRKHGMKPF MCRKCGKCLA VKGDWRTHEK NCGKRWLCAC GSDFKHKRSL  240
KDHIKAFGSG HGPFPPPFEG VQLREDAVPF PFLINKQRSL VPSMNSLGNV AEFPNTISGR  300
RTHYLQAPMQ TLSAVDLSTM QSF*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269|PubMed:11782451}.
UniprotTISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269|PubMed:11782451}.
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4324870.0AM432487.2 Vitis vinifera contig VV78X114964.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284131.10.0PREDICTED: protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-107TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A438FZM10.0A0A438FZM1_VITVI; Protein transparent TESTA 1
TrEMBLA5AQU80.0A5AQU8_VITVI; Uncharacterized protein
STRINGVIT_18s0001g05860.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-100C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]