PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009097001
Common NameLOC100259155, VIT_18s0001g06650
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 311aa    MW: 34622 Da    PI: 6.2593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009097001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13117168155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  GSVIVT01009097001 117 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YTQRGDQASIIGGAINFVKELE 168
                        79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.76E-14115172No hitNo description
PROSITE profilePS5088815.485116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-18116188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-14117185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MALEAVVFPT LDPFSYGCKG GGWSYDFDLQ EEDKALLGIL GNNTEPGSHG NWDSSSPSVM  60
QNAMEWDHNS SPEACTGDQS LAGVFPPTEE PPSTSTTGRR KRRRTKSCKN KEEVENQRMT  120
HIAVERNRRK QMNEYLAVLR SLMPPSYTQR GDQASIIGGA INFVKELEQL LQSLEAEKSS  180
KQQTNNSVSS PFSNFFTFPQ YSTRATHCTK DSMMGDNRWA VADIEVTMVE SHANIKILSK  240
RKTKQLLKIV AGFQSLSLTI LHLNVTTFDQ MVLYSLSVKV EEECQLTTVD EIAAAVNQML  300
RRIQEAAALN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199103RKRRR
299104RKRRRT
3117128RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4651190.0AM465119.2 Vitis vinifera contig VV78X277202.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285733.20.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T48e-93BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A438FZU40.0A0A438FZU4_VITVI; Transcription factor bHLH96
TrEMBLE0CRQ80.0E0CRQ8_VITVI; Uncharacterized protein
STRINGVIT_18s0001g06650.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]